Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq351396 329 4e-85 seq162061 190 2e-43 seq664408 138 1e-27 seq597246 122 1e-22 seq466979 113 5e-20 seq623740 104 3e-17 seq472319 102 9e-17 seq217498 102 9e-17 seq171123 102 9e-17 seq279680 87.8 2e-12 seq71309 84.2 2e-11 >seq351396 Length=451 Score = 329 bits (364), Expect = 4e-85 Identities = 289/360 (80%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 166681 GAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACC 166740 || || ||||||| ||| ||| || | |||||||| ||||||||||| |||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 166741 TACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTC 166800 || || || ||||||||||||||||| || || || | ||||||||||| ||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 166801 AACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTT 166860 ||||||||||| || | ||||||||| | || || |||||||| || || |||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 166861 ACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 166920 |||||| | ||| |||| || ||||| |||||||| || |||||||| |||||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 166921 ATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGT 166980 | | ||| |||| ||||| || | || |||||||| ||| || ||||||| ||| | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 166981 CTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCT 167040 || |||||||||||||||||||| ||||||||||||||||||||||| || || |||||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 190 bits (210), Expect = 2e-43 Identities = 243/335 (73%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 167603 CTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTA 167662 |||||||| || ||||| || ||||| || ||| | || |||||||| | | | Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 167663 GTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCT 167722 || | || ||||| ||||| || | || |||||||| || || || ||||| ||| Sbjct 276 GTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCT 335 Query 167723 GTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTT 167782 || || || || ||||| || || || || ||||||||||||| ||| ||||| || Sbjct 336 GTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTA 395 Query 167783 GCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCT 167842 ||||| |||||| ||||| | || ||| | || || || ||||| |||||| | ||||| Sbjct 396 GCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 455 Query 167843 TTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGT 167902 || ||||||||||||||||| || | |||||| || |||| | || || ||||| Sbjct 456 TTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGA 515 Query 167903 GTTACAGTAGAGAATACTCTGTATGAAGATGGTGA 167937 | || ||||| || ||||| | ||| || ||||| Sbjct 516 GCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 550 >seq664408 Length=200 Score = 138 bits (152), Expect = 1e-27 Identities = 149/196 (76%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 166434 TTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTT 166492 |||| || |||||||| || |||||||| || || | || || ||| || | || ||| Sbjct 197 TTGCTGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTA 138 Query 166493 TCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACA 166552 | |||||||| |||||||| | ||||| | || || ||| | ||||||| | Sbjct 137 TTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTA 78 Query 166553 TGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAG 166612 || |||| ||||| ||||||||||||||||| ||||| || ||||| ||| | ||||||| Sbjct 77 TGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAG 18 Query 166613 CAGGTGTATTCGGTGG 166628 | ||||||||||| || Sbjct 17 CTGGTGTATTCGGCGG 2 >seq597246 Length=243 Score = 122 bits (134), Expect = 1e-22 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 166210 GGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCA 166269 || ||| || | ||||| ||||| || |||||||||||| || | || | || || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 166270 ATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAAC 166329 || || | ||||| || || || |||||||| ||||| ||||||| ||| | || || Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 166330 GGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGT 166389 |||||||||| |||| | || | |||||| | | || | | || |||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 166390 CGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCT 166449 ||||| |||||| | || ||| | |||||||||||||||||| || |||||||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 166450 GC 166451 || Sbjct 3 GC 2 >seq466979 Length=342 Score = 113 bits (124), Expect = 5e-20 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 167969 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTT 168028 ||||| | || ||||||||||| ||||||||||||||| | || ||||| ||||| ||| Sbjct 225 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTT 166 Query 168029 GGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075 ||| ||||||| |||||| |||||||| || ||||||||||| || Sbjct 165 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATT 119 >seq623740 Length=225 Score = 104 bits (114), Expect = 3e-17 Identities = 139/191 (73%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 167677 TTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGT--CTGTTTTTCTCATC 167734 ||| ||||| || | || ||| ||| || || || ||| ||| |||| || || || Sbjct 190 TTATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATT 132 Query 167735 TATCCTCTCGGACAG-----TCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGA 167789 ||||| || || | | | ||||||||||||| ||| ||||| || ||||| | Sbjct 131 TATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAA 72 Query 167790 TATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATA 167849 ||||| ||||| | || ||| | || || || ||||| |||||| | ||||| || |||| Sbjct 71 TATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATA 12 Query 167850 TGATGGGAGTT 167860 ||||||||||| Sbjct 11 TGATGGGAGTT 1 >seq472319 Length=337 Score = 102 bits (112), Expect = 9e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 166716 CAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCG 166775 ||| ||||||||||| ||||||| || || || ||||||||||||||||| || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 166776 CCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTT 166826 | ||||||||||| ||| |||||||||||||| || | |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq217498 Length=656 Score = 102 bits (112), Expect = 9e-17 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||| | ||| | || || | ||||||||||| | || ||||| || | Sbjct 320 CTTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 379 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||| || ||| | ||| | |||| | ||||| || || |||| ||| | || || | Sbjct 380 GATGATCCCTACTTTATTGACCGCAA-CTTCTGTATTTATTATCGCCTTCATCGCTGCCC 438 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 |||| || ||||| ||||| || |||||||| || | || ||| || | ||||| |||| Sbjct 439 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 498 Query 166232 ACATCATCTCTGGTGCTGTT 166251 | || ||||||||||| || Sbjct 499 ATATTCTCTCTGGTGCTATT 518 >seq171123 Length=784 Score = 102 bits (112), Expect = 9e-17 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 166890 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATG--GTCAGGGTCGTGTGCTC 166947 |||||| || |||||| | || ||||| || | | ||| |||| || || || | Sbjct 642 CAACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATACAGTCAAGGCCGCGTTATT 701 Query 166948 AACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGT 167007 || ||||| | ||| || ||||||||||| | | |||||||||||||||||| | || Sbjct 702 AATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGA 761 Query 167008 AATGCTCACAACTTCCCTCTGGA 167030 |||||||||||||||||||| || Sbjct 762 AATGCTCACAACTTCCCTCTAGA 784 >seq279680 Length=543 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 166948 AACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGT 167007 || ||||| | ||| || ||||||||||| | | |||||||||||||||||| | || Sbjct 509 AATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGA 450 Query 167008 AATGCTCACAACTTCCCTCTGGATCT 167033 |||||||||||||||||||| || || Sbjct 449 AATGCTCACAACTTCCCTCTAGACCT 424 >seq71309 Length=1427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 166681 GAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACC 166740 || || | ||||| ||| ||| || | | |||||| ||||||||||| |||||||| Sbjct 649 GAAACAATTGAAAATGAATCT---AATGAGGTTTACAATTTTGGTCAAGAGGAAGAGACT 705 Query 166741 TACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTC 166800 || || || ||| || |||||||| || || | ||||||||||| || | ||| Sbjct 706 TATAATATTGTGTTTGTGCATGGTTATTTTTTCCGATTAATCTTCCAATATGCATGTTTC 765 Query 166801 AACAACTCTCGCTCGCTGCACTTCTTC 166827 |||||||| || || | ||||| ||| Sbjct 766 AACAACTCACGTTCTTTCCACTTTTTC 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562508517328000