Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq528399 102 9e-17 seq79869 98.7 1e-15 seq80178 91.5 2e-13 seq182540 84.2 2e-11 seq164167 84.2 2e-11 seq3314 84.2 2e-11 >seq528399 Length=291 Score = 102 bits (112), Expect = 9e-17 Identities = 88/107 (82%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 287 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 228 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAA-TTTTTGT 126368 |||||||| |||||||| ||||||||| || || || ||||||| Sbjct 227 GTGGGTTCAAACCCCACTTCTGACAAATCTTTTTTCAAACTTTTTGT 181 >seq79869 Length=1336 Score = 98.7 bits (108), Expect = 1e-15 Identities = 83/101 (82%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 126259 ATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--C 126316 || || ||||||| ||||||||||||||||||||||||| | ||| |||||| | || | Sbjct 236 ATGTAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTAC 177 Query 126317 GGGAGCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 | | |||||||||| |||||||| |||||||| ||| || Sbjct 176 GAGGGCGTGGGTTCAAACCCCACTTCTGACAAACCATTTTT 136 >seq80178 Length=1333 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126275 GCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCGTGGGTTCGA 126332 ||||||||||||||||||||||| | ||| |||||| | || || | |||||||||| | Sbjct 1333 GCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGCGTGGGTTCAA 1274 Query 126333 ACCCCACACCTGACAAATTATTAT 126356 ||||||| |||||||||| |||| Sbjct 1273 ACCCCACTTCTGACAAATTTTTAT 1250 >seq182540 Length=747 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/99 (80%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 233 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 176 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||| || |||||| ||| ||| | || ||| |||||| Sbjct 175 TTCAAATCCCACAGCTGTCAA--TCTTTTTGTTATTTTT 139 >seq164167 Length=808 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 159 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 216 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| || ||| || Sbjct 217 GGGTTCAAATCCCACAGCTGTCACATTTTT 246 >seq3314 Length=4792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 2446 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 2389 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| || ||| || Sbjct 2388 GGGTTCAAATCCCACAGCTGTCATATTTTT 2359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552223680903200