Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq307656 131 1e-25 seq12510 104 2e-17 seq113513 102 7e-17 seq84174 87.8 1e-12 seq83756 86.0 5e-12 >seq307656 Length=504 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| || |||||||| | || ||||| || || | | Sbjct 300 ATGCAAATCTTTGTCAAGACTTTGACGGGTAAAACTATTACCCTTGAGGTAGAGGCGTCT 359 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | ||| || || || |||||||| || ||||| || || || Sbjct 360 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGAATTCCGCCAGACCAG 419 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||||||||| ||||||||| |||||| || ||| |||||| Sbjct 420 CAGCGTCTCATTTTCGCCGGCAAACAATTAGAGGATGGTCGCACCCTCAGCGACTACAAC 479 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || ||||| || Sbjct 480 ATCCAGAAGGAATCAAC 496 >seq12510 Length=3164 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || ||||||| || ||||| || || | || || || || |||| |||||||| || Sbjct 2870 TACAGATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACACTTGAAGTCGAGT 2929 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 || | |||||| | ||| || | || || || || ||||||||| | || || || | Sbjct 2930 CCTCTGATACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGTGCATCCCCCCGG 2989 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 | || | || || || || || || || ||| | |||||| ||||||| | | |||| Sbjct 2990 ACCAGCGGCGACTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGGCGGATT 3049 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||| || || || |||||| | || | ||| | || |||| || || Sbjct 3050 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTTCTCCGCCTGCGTGGTGG 3101 >seq113513 Length=1062 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || || |||| || || ||||| | | Sbjct 782 AAGATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGAGC 841 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | ||| | |||| || || || ||||||||||| || | || || Sbjct 842 AGCGACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCACTCCGGAC 901 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || ||||| ||||| ||| | |||||| | | ||| || | || ||| Sbjct 902 CAGCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACCCTCGCTGACTAC 961 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| ||||| || |||||| Sbjct 962 AACATCCAAAAGGAGTCCACC 982 >seq84174 Length=1294 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || || ||||||||||||||||| || ||||| || | ||||||||||| || || ||| Sbjct 1 ATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAGAGGCTTATATTTGCTGGGAAGCAG 60 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 | |||||| || ||| | | ||||| ||||| ||||| || ||||| | ||| | Sbjct 61 CTGGAGGATGGGCGTACCTTGGCGGATTATAACATCCAAAAGGAGTCCACTCTTCATCTT 120 Query 22426 GTTTTGCGATTGCGCGGAGGT 22446 || |||| | || || ||| Sbjct 121 GTGCTGCGTCTCCGTGGTGGT 141 >seq83756 Length=1298 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || ||||||| || ||||| || || | ||||| || || |||| ||||| ||||| Sbjct 160 TACAGATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGT 101 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 || | || ||| | ||| || | || ||| || || ||||||||||| || || || | Sbjct 100 CCTCTGACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCGG 41 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 | || || || || || ||||| || || ||| | ||||| Sbjct 40 ACCAGCAGCGCCTCATCTTTGCTGGGAAGCAGCTTGAGGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416320199511700