Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq88849 161 2e-34 seq353702 134 3e-26 seq44212 91.5 3e-13 seq506579 89.7 1e-12 seq2528 89.7 1e-12 seq506698 87.8 4e-12 seq461044 87.8 4e-12 seq369037 87.8 4e-12 seq192151 87.8 4e-12 seq51821 87.8 4e-12 seq42715 87.8 4e-12 seq15078 87.8 4e-12 seq3936 87.8 4e-12 seq207 87.8 4e-12 seq311992 86.0 1e-11 seq92891 86.0 1e-11 >seq88849 Length=1251 Score = 161 bits (178), Expect = 2e-34 Identities = 533/818 (65%), Gaps = 18/818 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | ||| |||| ||| ||||| |||||||| ||||||||||||| ||| Sbjct 64 TCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTTGGTG 123 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| || || ||| || || | || | |||||| || || ||||| | Sbjct 124 GCGTTGTAGAGCCTGCCGCAGCCGAGCGCCATGAGCAGGCGGTCGGCGACGAACTCGATG 183 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || || ||||||||| | | || || | || || |||| | Sbjct 184 TACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCATGGCAGCGCGTCGCAGACG 243 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || |||| |||||| || || | ||| | | | |||| Sbjct 244 AACTCGCGCTCGATGTCAACAGCCTCCCTGACGATCTCGAACACGCGCGACTCGTCCAGC 303 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 ||| | || | ||| ||||| | | || | ||| || ||||||||||| Sbjct 304 TTGCCCCGGAGGATCTCGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGCCCCTCGTCGCGT 363 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 ||||| ||||||||| | ||||| ||||| | ||| || ||| ||||||||||| Sbjct 364 GAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCCCCCGCTTCTTGAGCCAGAAG 423 Query 251923 ATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGC 251982 || ||||| ||||| || ||||| | | |||||||| || | | || || | |||| Sbjct 424 ATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCATGCGAACGCCACGATGCGC 483 Query 251983 TCAGCAAACGACTTGTCCTGCGAC-AAGAACTTCTGTGCCCATGCTGCCTTCTTTCCAAC 252041 || || || || | || || | | | | ||||| | ||||| | || Sbjct 484 TCCGCGAAGCGCTCG-CCGCCGTCGATCCAGCGGAGCGCCCAGTCGGCCTTGCGGCGCAC 542 Query 252042 CGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATGAG 252101 |||||||| || ||||| || ||||| || | |||||| |||| |||| Sbjct 543 GGCGGGGATGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGGCGGCGTCGCGGATGTA 602 Query 252102 CGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAAGC 252161 | || | || || |||||||||||||| |||||| ||| || |||||| | | Sbjct 603 GGTCTCGATGAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCC 662 Query 252162 ATAGAATAGACGCGCGGAAGGGTCGGTGACTT--CCGT-GGA---AAAGTTGTTTGCAAT 252215 |||| || ||||| | |||| || | ||| ||| ||| | || | Sbjct 663 GTAGA--AGGCGCGC----GCCTCGGCCACCTGCACGTCGGACATGAAGCGGGACGCGAG 716 Query 252216 GTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTG 252275 |||||| | ||| ||||| ||| | | || |||||| | || | | ||||||||| Sbjct 717 GTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGAGATGAAGTG 776 Query 252276 ACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--AACT 252333 ||||| ||||| |||| || ||||| | |||| || ||||| || Sbjct 777 GCGCTCGCCGTCGGTGAGGGTGGTGTCCCAGTGGCGCGCGTCC-GA-GGAGAGGTCCACC 834 Query 252334 TCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTA 252371 || || |||||||||| | || ||| ||||||||||| Sbjct 835 TCCTCGGCCGTCCAGAAGGAGGCCACGGCCTTCTTGTA 872 >seq353702 Length=449 Score = 134 bits (148), Expect = 3e-26 Identities = 263/386 (68%), Gaps = 6/386 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | ||| |||| ||| ||||| |||||||| ||||||||||||| ||| Sbjct 386 TCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTTGGTG 327 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| || || || || || | || | |||||| || || ||||| | Sbjct 326 GCGTTGTAGAGCCTGCCGCACCCGAGCGCCATGAGCAGGCGGTCGGCGACGAACTCGATG 267 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || || ||||||||||| | || || | || || |||| | Sbjct 266 TACTGGCTCATGAGGTCGCCGTTCATGCCAACGAGCGCGCACGGCAGCGCGTCGCAGACG 207 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || ||||||||||| || || | || | | | |||| Sbjct 206 AACTCGCGCTCGATGTCAACTGCCTCCCTGACGATCTCGAAGACGCGGGACTCGTCCAGC 147 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTG--GTGCAGACCCTCGTCG 251859 ||| | || | ||| |||| || ||| || || | |||||| || |||||| Sbjct 146 TTGCCCCGGAGGATCTCGTAGAGGAGGCACGCGAA---GTCGCAGTGCAGCCCTTCGTCG 90 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||||| ||||||||| | ||||| ||||| | ||| || ||| |||||||| Sbjct 89 CGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCCCCCGCTTCTTGAGCCAG 30 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAA 251945 ||||| ||||| ||||| || ||||| Sbjct 29 AAGATGGCGCAGAAGGAGCCCGAGAA 4 >seq44212 Length=1842 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 315 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 256 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 255 AGCCCCAC 248 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 814 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 755 Query 142562 GCCCCAC 142568 ||||||| Sbjct 754 GCCCCAC 748 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 1130 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 1071 Query 142562 GCCCCAC 142568 ||||||| Sbjct 1070 GCCCCAC 1064 >seq506579 Length=309 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 75 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 16 Query 142562 GCCCCAC 142568 ||||||| Sbjct 15 GCCCCAC 9 >seq2528 Length=5126 Score = 89.7 bits (98), Expect = 1e-12 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1044 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 985 Query 142563 CCCCACATCGGGCAGAAGTCG 142583 |||||| |||| ||| ||| Sbjct 984 CCCCACGGTGGGC-GAATTCG 965 >seq506698 Length=309 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 74 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15 Query 142563 CCCCAC 142568 |||||| Sbjct 14 CCCCAC 9 >seq461044 Length=347 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 342 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 283 Query 142563 CCCCAC 142568 |||||| Sbjct 282 CCCCAC 277 >seq369037 Length=433 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 360 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 419 Query 142563 CCCCAC 142568 |||||| Sbjct 420 CCCCAC 425 >seq192151 Length=719 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 333 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 274 Query 142563 CCCCAC 142568 |||||| Sbjct 273 CCCCAC 268 >seq51821 Length=1699 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 310 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 251 Query 142563 CCCCAC 142568 |||||| Sbjct 250 CCCCAC 245 >seq42715 Length=1874 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 74 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15 Query 142563 CCCCAC 142568 |||||| Sbjct 14 CCCCAC 9 >seq15078 Length=2953 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2438 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2379 Query 142563 CCCCAC 142568 |||||| Sbjct 2378 CCCCAC 2373 >seq3936 Length=4580 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4262 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4321 Query 142563 CCCCAC 142568 |||||| Sbjct 4322 CCCCAC 4327 >seq207 Length=8668 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4573 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4514 Query 142563 CCCCAC 142568 |||||| Sbjct 4513 CCCCAC 4508 >seq311992 Length=498 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 56 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 115 Query 142564 CCCAC 142568 ||||| Sbjct 116 CCCAC 120 >seq92891 Length=1216 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 73 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14 Query 142564 CCCAC 142568 ||||| Sbjct 13 CCCAC 9 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 229 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 170 Query 142564 CCCAC 142568 ||||| Sbjct 169 CCCAC 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1019063769657380