Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq88849 389 7e-103 seq12173 351 2e-91 seq353702 241 2e-58 >seq88849 Length=1251 Score = 389 bits (430), Expect = 7e-103 Identities = 602/850 (71%), Gaps = 35/850 (4%) Strand=Plus/Minus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 ||||||||||| | |||| |||||| ||||||||| | ||||| || |||| || Sbjct 872 TACAAGAAGGCCGTGGCCTCCTTCTGGACGGCCGAGGAGGTGGACCTCTCCTCGGACGCG 813 Query 42372 GCCGGCTGGGAG-------TCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACT 42424 | |||||| |||| | | | || || | ||| || || | || Sbjct 812 CGCCACTGGGACACCACCCTCACCGACGGCGAGCGCCAC----TTCATCTCCCACGTGCT 757 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||||||||||||||||| |||||||| || |||||||| || || | |||||| Sbjct 756 CGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCCCGCTTCATGTC 697 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 || |||||| ||||||||| |||||||||||||||||| ||||| |||||| | Sbjct 696 CGACGTGCAGGTGGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACAT 637 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCCCGTCGAGCG 42601 ||||| ||| ||||| | ||||||| | || ||||||| || ||| |||| Sbjct 636 CCACTCGGAGATGTACTCG---CTGCTCATCGAGACCTACATCCGCGACGCCGCCGAGAA 580 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || | || ||| ||||| || || || ||| | | ||||| |||||||| Sbjct 579 GGACCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGC 520 Query 42662 GCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 |||| ||||||||| | ||| ||| |||| ||| | | || || || | Sbjct 519 GCTCCGCTGGATCGACGGCGGCGAGCGC----TTCGCGGAGCGCATCGTGGCGTTCGCAT 464 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 ||||||||||||||||||||||||| ||||| | ||||||||||||||||| || || Sbjct 463 GCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGG 404 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | |||||||| ||||||||||| ||||| |||||| | ||||||||||| || Sbjct 403 GGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCACGCGACGAGGGGCTCCACT 344 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG----GAG 42896 | ||||| ||||||||||| | |||| |||| || |||| || || | | | Sbjct 343 GCGACTTCGCCTGCCTCCTCT--ACGAG-ATCCTCCGGGGCAAG--CTGGACGAGTCGCG 289 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || || || | ||| ||| |||||| || || |||||| |||||| || | || Sbjct 288 CGTGTTCGAG--ATCGTCAGGGAGGCTGTTGACATCGAGCGCGAGTTCGTCTGCGACGCG 231 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 ||||| | || |||||||||||| |||||||||| || |||||||| ||| |||| Sbjct 230 CTGCCATGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTC 171 Query 43017 GCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTT 43075 ||||||| || || || | | | || | || | ||||||||| | | |||||| Sbjct 170 GCCGACCGCCTGCTCATGGC-GCTCGGCTGCGGCAGGCTCTACAACGCCACCAACCCCTT 112 Query 43076 CGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGC 43135 ||||| |||||| |||||| || |||| |||||||||||||||||||||||||||| Sbjct 111 CGACTGGATGGAGCTCATCTCCCTGCAGGGAAAGACCAACTTTTTCGAGAAGCGCGTCGG 52 Query 43136 CGACTACCAG 43145 ||| |||||| Sbjct 51 CGAGTACCAG 42 >seq12173 Length=3197 Score = 351 bits (388), Expect = 2e-91 Identities = 521/732 (71%), Gaps = 24/732 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| ||| |||||||| ||| ||||||||||| Sbjct 779 CTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCTCCAGGTTCATG 838 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| | ||||| ||| |||||||||||||||||| ||||| |||||| Sbjct 839 TCCGACGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 898 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | || ||||||| || || |||| Sbjct 899 ATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAG 958 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||| | || || | ||| | | ||||| | |||||| Sbjct 959 GACCGCCTCTTCCGCGCCGTCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGTCTGGGCC 1018 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | ||||||||| | ||| ||| |||| |||| | || || ||||| | Sbjct 1019 ATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGACTCGTCGCCTTCGCATG 1074 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 |||||||||||| |||||||||||| ||||| | ||||||||||||||||| || || Sbjct 1075 CGTCGAGGGCATATTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGG 1134 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 | |||||||| ||||||||||| |||| |||||| | |||||||| | || | Sbjct 1135 GCTCATGCCCGGCCTCACCTTCTCCAACGTGCTCATCTCGCGTGACGAGGGCCGCCACTG 1194 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGG 42899 ||||| |||||||||| ||| ||| ||||| |||| || || || || Sbjct 1195 CGACTTCGCCTGCCTCC---TCTACGGCCTCCTCAACAGCAAG--CTTGACGAGTCCCGC 1249 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959 ||||| | ||| || | || ||||| || ||||||| ||||||| || | |||| Sbjct 1250 GTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCATCTGCGACGCGCTC 1309 Query 42960 CCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019 ||| |||| |||||||||||| || ||||||| || ||||||| ||| |||||| Sbjct 1310 CCCTGCGCCCTCGTCGGCATGAACGCCGGCCTCATGGGCCAGTACATTGAGTTCGTCGCA 1369 Query 43020 GACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC----TCTACAACACGCCGTGCCCC 43073 ||| | |||| | |||| ||| || |||| | |||||| | | ||| Sbjct 1370 GAC---CGCCTG---CTCATGGCGCTCGGCTGCGCCAAGATGTACAACGCCGCCAACCCG 1423 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 ||||||| |||||| |||||| || |||||||||||||||| || |||||||| ||| Sbjct 1424 TTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTTGAGAAGCGTGTC 1483 Query 43134 GCCGACTACCAG 43145 | |||||||||| Sbjct 1484 GGCGACTACCAG 1495 >seq353702 Length=449 Score = 241 bits (266), Expect = 2e-58 Identities = 308/415 (74%), Gaps = 11/415 (3%) Strand=Plus/Plus Query 42735 TTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGA 42794 |||||||||||| ||||| | ||||||||||||||||| || || | |||||||| Sbjct 1 TTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGC 60 Query 42795 CTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGC 42854 ||||||||||| ||||| |||||| | ||||| |||||||| | ||||| || ||| Sbjct 61 CTCACCTTCTCCAACGAGCTCATCTCACGCGACGAAGGGCTGCACTGCGACTTCGCGTGC 120 Query 42855 CTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGTCCGGGCCATCA 42912 ||||| | |||| |||| || |||| || || || || ||| | ||| Sbjct 121 CTCCTCT--ACGAG-ATCCTCCGGGGCAAG--CTGGACGAGTCCCGCGTCTTCGAGATCG 175 Query 42913 TCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG-TCCCTG 42971 ||| |||||| || || |||||| |||||| || | ||||| ||||| | || Sbjct 176 TCAGGGAGGCAGTTGACATCGAGCGCGAGTTCGTCTGCGACGCGCTG-CCGTGCGCGCTC 234 Query 42972 GTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT- 43030 || ||||||||| |||||||||| || |||||||| ||| ||||||||||| || || Sbjct 235 GTTGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTC 294 Query 43031 GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAA 43090 || | | | || | || | ||||||||| | | ||||||||||| |||||| Sbjct 295 ATGGC-GCTCGGGTGCGGCAGGCTCTACAACGCCACCAACCCCTTCGACTGGATGGAGCT 353 Query 43091 CATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||| || |||| |||||||||||||||||||||||||||| ||| |||||| Sbjct 354 CATCTCCCTGCAGGGAAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAGTACCAG 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 936475451396800