Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq213696 87.8 1e-12 seq59492 82.4 6e-11 seq17435 82.4 6e-11 >seq213696 Length=664 Score = 87.8 bits (96), Expect = 1e-12 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || |||||||| || | ||| |||||||||||||||||||||||| || || || Sbjct 435 AGGCGAAGCACCAGGTGGATTGTGGACTCCTTCTGAATGTTGTAATCTGC-AAGGGTGCG 377 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTG 34010 |||| |||| ||||||||||| || ||||| |||||||| Sbjct 376 GCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTG 335 >seq59492 Length=1577 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||||||| ||||| ||||||||| |||||||| || |||| || Sbjct 293 AGGCGGAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCGG 234 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || |||| ||||| |||||||| ||||| |||||||| ||| Sbjct 233 CCATCCTCCAGCTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCC 189 >seq17435 Length=2785 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| |||||||| ||| || ||| ||| ||||| ||||||||||| ||| Sbjct 1840 CCACCCCTGAGCCTCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCC 1781 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| ||| | || ||||| ||||| || ||||| || || | ||||| || Sbjct 1780 AATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTC 1728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393838623076360