Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6868 140 8e-28 seq307656 138 3e-27 seq213696 104 5e-17 seq12510 104 5e-17 seq385372 102 2e-16 seq105659 98.7 2e-15 seq12734 93.3 1e-13 seq474182 89.7 1e-12 seq300013 89.7 1e-12 seq68517 86.0 1e-11 seq106204 84.2 5e-11 >seq6868 Length=3892 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || || || || | ||| || || ||||| || ||||||||| Sbjct 2882 CCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 2941 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||| || ||||| || || Sbjct 2942 AGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGA 3001 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||||||||| || || ||||| || || | ||||| || || Sbjct 3002 ATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 3061 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 3062 TCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 3108 >seq307656 Length=504 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||||||||||||| || ||||| |||||||||| |||||| || ||||| Sbjct 262 TCTTTTTGGATATTATAGTCGCTTAGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAAA 203 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || ||| || |||||||| ||||| ||||| | || || || Sbjct 202 ATGAGACGTTGCTGGTCTGGTGGTATGCCTTCTTTGTCCTGAATTTTTGACTTGACATTA 143 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || | || |||||||| || || || || || || |||||||||||| Sbjct 142 TCAATAGTGTCCGAAGCCTCCACTTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGACG 83 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 82 AAAATCTGCAT 72 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || |||||| ||| ||||| || || ||||||||||| || ||||| Sbjct 491 TTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATTGTTTGCCGGCGAA 432 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || |||||||| || ||| || |||||||| || |||||||| |||| |||||| Sbjct 431 AATGAGACGCTGCTG---GTCTGGCGGAATTCCTTCCTTGTCCTGGATCTTCGATTTCAC 375 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || || ||||| || || || || || || || |||| |||||| Sbjct 374 ATTGTCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCGTCAAAGTCTT 315 Query 288459 GACGAATATCTGCAT 288473 ||| || || ||||| Sbjct 314 GACAAAGATTTGCAT 300 >seq213696 Length=664 Score = 104 bits (114), Expect = 5e-17 Identities = 148/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | ||| || || || || ||| || || || || || || || Sbjct 447 TGGCCACCACGGAGGCGAAGCACCAGGTGGATTGTGGACTCCTTCTGAATGTTGTAATCT 388 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC- 288362 || || ||||| ||||| || | || || || ||||||||||| ||||| || || Sbjct 387 GCAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGCTGGTCC 328 Query 288363 --TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| ||||| ||||||||||| ||||| || || || || || | || || Sbjct 327 GGCGGGATGCCTTCCTTATCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGGAC 268 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGG 288448 || || ||||| ||||| ||||| |||| Sbjct 267 TCGACCTCGAGGGTGATGGTCTTGCCGG 240 >seq12510 Length=3164 Score = 104 bits (114), Expect = 5e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | ||| || || ||||| || || | Sbjct 3105 CATG-CCACCACGCAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAAT 3047 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||| || || || | || ||||| ||||||||||| ||| | || Sbjct 3046 CCGCCAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGTCGCCGCTGGTCCG 2987 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| | || || |||||||| ||||| ||||| || || || | ||| || | Sbjct 2986 GGGGGATGCACTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTATCAGAGGACT 2927 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || ||||| ||||| || || || ||||| || || |||||||| Sbjct 2926 CGACTTCAAGTGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 2875 >seq385372 Length=416 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || ||||| || | |||| || || || | || ||||||||| Sbjct 209 CCCCCGCGTAGGCGGAGCACGAGGTGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCG 150 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||| | ||||| || | || || || |||||||| || ||||| || ||| Sbjct 149 AGGGTGTGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGG 90 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || || || ||||| || || | ||||| || || Sbjct 89 ATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 30 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 || |||||||| ||||| || ||||| || Sbjct 29 TCCAGCGTGATGGTCTTGCCCGTCAGGGT 1 >seq105659 Length=1116 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || |||||||| || || || ||||| || || | ||||| || || ||| Sbjct 442 CCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCGACCTCG 383 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct 382 AGCGTGATCGTCTTCCCCGTCAGCGTCTTGACGAAGATCTGCAT 339 >seq12734 Length=3143 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || |||||| | || ||||| || ||||||||||| || |||||||| Sbjct 3138 TGCTTCCCGGCGAAGTTGAGCCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATC 3079 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || || || || | ||||| || || ||||| ||||| ||||| || Sbjct 3078 TTTGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTGCCC 3019 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| |||||||| Sbjct 3018 GTCAGGGTCTTGACGAAGATCTGCAT 2993 >seq474182 Length=336 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || |||||||| || || || ||||| || || | ||||| || || ||| Sbjct 191 CCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCCATGGTGTCGCTGCTCTCGACCTCG 132 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||||||||| ||| | |||||||||| |||||||| Sbjct 131 AGCGTGATCGTCTTCCCCGTCCGCGTCTTGACGAGGATCTGCAT 88 >seq300013 Length=514 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || |||||||| || || || ||||| || || | ||||| || || ||| Sbjct 7 CCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCCATGGTGTCGCTGCTCTCGACCTCG 66 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||||||||| ||| | |||||||||| |||||||| Sbjct 67 AGCGTGATCGTCTTCCCCGTCCGCGTCTTGACGAGGATCTGCAT 110 >seq68517 Length=1460 Score = 86.0 bits (94), Expect = 1e-11 Identities = 81/104 (78%), Gaps = 11/104 (11%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || |||||||| || || || ||||| ||| |||| || || ||| Sbjct 447 CCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCT--------GCTC---TCGACCTCG 399 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct 398 AGCGTGATCGTCTTCCCCGTCAGCGTCTTGACGAAGATCTGCAT 355 >seq106204 Length=1113 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || | |||||| || || || || || || | || ||||| || || || Sbjct 430 CCTTCCTTGTTCTGGATCTTGGCCTTGACTTTATCGACAGTGTCGCTGCTCTCGACCTCT 489 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct 490 AGCGTGATCGTCTTCCCCGTCAGCGTCTTCACGAATATCTGCAT 533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1169585540970040