Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq353702 145 2e-29 seq88849 145 2e-29 seq12173 145 2e-29 >seq353702 Length=449 Score = 145 bits (160), Expect = 2e-29 Identities = 273/396 (69%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||||||||||| ||||| ||| || | ||||| |||||| | || ||| Sbjct 16 TTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAAC 75 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 ||| ||||| |||||||| || || ||| | |||| ||| || | || | Sbjct 76 GAGCTCATCTCACGCGACGAAGGGCTGCACTGCGACTTCGCGTGC-CTCCTCTACGAGAT 134 Query 243465 GCTCCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGA 243521 |||| | |||||| || | || || ||| | ||| ||| || |||||||| Sbjct 135 CCTCCGGGGCAAGCTGGACGAGTCC---CGCGTCTTCGAGATCGTCAGGGAGGCAGTTGA 191 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGA 243581 | ||| || ||| | |||||||| | || ||| ||| ||||||||||| || Sbjct 192 CATCGAGCGCGAGTTCGTCTGCGACGCGCTGCCGTGCGCGCTCGTTGGCATGAACGGCGA 251 Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641 |||||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | | Sbjct 252 CCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGGGTGCGG 311 Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701 | | |||||| ||| |||||||| | || ||||||||||| || || || || || Sbjct 312 CAGGCTCTACAACGCCACCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGAAA 371 Query 243702 AACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || ||||| ||||| ||||| ||| | || || || Sbjct 372 GACCAACTTTTTCGAGAAGCGCGTCGGCGAGTACCA 407 >seq88849 Length=1251 Score = 145 bits (160), Expect = 2e-29 Identities = 305/452 (67%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||| || | | ||||| || || || | || || || ||| Sbjct 491 TTCGCGGAGCGCATCGTGGCGTTCGCATGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 432 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 431 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGAG 372 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| ||||||||||| || ||| | |||| || | || | ||| Sbjct 371 CTCATCTCACGCGACGAGGGGCTCCACTGCGACTTCGCCTGCCTCCTCTACGAGATCCTC 312 Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | | |||||| || | ||| || || | ||| ||| || || ||||| | | Sbjct 311 CGGGGCAAGCTGGACGAGTCG---CGCGTGTTCGAGATCGTCAGGGAGGCTGTTGACATC 255 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || || ||| | |||||||| | |||||| ||| | ||||||||| || ||| Sbjct 254 GAGCGCGAGTTCGTCTGCGACGCGCTGCCATGCGCGCTCGTCGGCATGAACGGCGACCTC 195 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | | | Sbjct 194 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGGCTGCGGCAGG 135 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 | |||||| ||| |||||||| | || ||||||||||| || || || || || || Sbjct 134 CTCTACAACGCCACCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGAAAGACC 75 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||| ||||| ||||| ||| | || || || Sbjct 74 AACTTTTTCGAGAAGCGCGTCGGCGAGTACCA 43 >seq12173 Length=3197 Score = 145 bits (160), Expect = 2e-29 Identities = 305/452 (67%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||||| | ||||| || || || | || || || ||| Sbjct 1046 TTCGCCGAGCGACTCGTCGCCTTCGCATGCGTCGAGGGCATATTCTTCTCGGGCTCCTTC 1105 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||| | Sbjct 1106 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGTG 1165 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| || |||||||||| ||| | |||| || | || ||| Sbjct 1166 CTCATCTCGCGTGACGAGGGCCGCCACTGCGACTTCGCCTGCCTCCTCTACGGCCTCCTC 1225 Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | | |||||| || | || || ||| | ||| || | || || || || | | Sbjct 1226 AACAGCAAGCTTGACGAGTCC---CGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 1282 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || | ||| ||||| |||||||| | || ||| || | ||||||||| | | ||| Sbjct 1283 GAGAGGGAGTTCATCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCCGGCCTC 1342 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||||| |||||||| || ||||| || |||||| | |||| ||||| || | | || Sbjct 1343 ATGGGCCAGTACATTGAGTTCGTCGCAGACCGCCTGCTCATGGCGCTCGGCTGCGCCAAG 1402 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 |||||||| || ||||| || | || ||||||||||| || || || || || || Sbjct 1403 ATGTACAACGCCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACC 1462 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||||||| || ||||||||| | || || || Sbjct 1463 AACTTCTTTGAGAAGCGTGTCGGCGACTACCA 1494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1093466443583000