Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq12173 165 1e-35 seq88849 140 4e-28 seq7224 96.9 4e-15 seq353702 93.3 5e-14 seq47147 87.8 2e-12 seq625560 84.2 3e-11 >seq12173 Length=3197 Score = 165 bits (182), Expect = 1e-35 Identities = 311/452 (69%), Gaps = 8/452 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || |||||||| |||||||| ||||| || | || | ||| |||||| Sbjct 1492 GTAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1433 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 125876 | || || ||||| | ||| | || ||||| | || | | |||| || | Sbjct 1432 CCAGTCGAACGGGTTGGCGGCGTTGTACATC-TTGGCGCAGCCGAGCGCCATGAGCAGGC 1374 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 | || | |||| |||||||||||| ||| | | |||||| |||| |||| | Sbjct 1373 GGTCTGCGACGAACTCAATGTACTGGCCCATGAGGCCGGCGTTCATGCCGACGAGGGCGC 1314 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | ||||||||||| |||||||| || |||| || || ||||| || ||||| || Sbjct 1313 AGGGGAGCGCGTCGCAGATGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGC 1254 Query 125997 GAATGGTGTCCACCCCAGGT---CTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053 | | | | | | || | || ||| | | | || ||| || ||| || | Sbjct 1253 GGACGCGGGACTCGTCAAGCTTGCTGTTGAGGAGGCCGTAGAGGAGG--CA-GGCGAAGT 1197 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | |||| | ||||||||||| |||||||| | || |||||| || || ||||||| Sbjct 1196 CGCAGTGGCGGCCCTCGTCACGCGAGATGAGCACGTTGGAGAAGGTGAGGCCGGGCATGA 1137 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 | ||||||||||| | |||||| || || || || || ||||||||||| || ||||| | Sbjct 1136 GCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAATATGCCCTCGA 1077 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 | || ||||| || | ||| ||||| || ||| Sbjct 1076 CGCATGCGAAGGCGACGAGTCGCTCGGCGAAG 1045 >seq88849 Length=1251 Score = 140 bits (154), Expect = 4e-28 Identities = 304/450 (68%), Gaps = 4/450 (1%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||| ||||| ||||| || | || | ||| |||||| Sbjct 45 GTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCAT 104 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 125876 | || || ||||| | | ||| | | | ||| || | | |||| || | Sbjct 105 CCAGTCGAAGGGGTTGGTGGCGTTGTAGAGCCTGCCGCAGCCGAG-CGCCATGAGCAGGC 163 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 | || | |||| |||| ||||||| ||| || |||||| |||| ||| | Sbjct 164 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGC 223 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 |||| |||||||| ||| |||| | ||| || || || || |||| ||||| || Sbjct 224 ATGGCAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACAGCCTCCCTGACGATCTCGA 283 Query 125997 GAATG-GTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCT 126055 | | | | | |||| | | || | ||| | |||| ||| || || Sbjct 284 ACACGCGCGACTCGTCCAGCT-TGCCCCGGAGGATCTCGTAGAGGAGGCAGGCGAAGTCG 342 Query 126056 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGA 126115 |||||| |||||||| || |||||||| || || |||||| || || |||||||| Sbjct 343 CAGTGGAGCCCCTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGC 402 Query 126116 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||||||||||| | |||||| || || || || || |||||||||||||| ||||| || Sbjct 403 CCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACG 462 Query 126176 CACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || |||||||| | || ||||| || ||| Sbjct 463 CATGCGAACGCCACGATGCGCTCCGCGAAG 492 >seq7224 Length=3831 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 ||||||||||||||||||||||| || ||||||| || || || | |||||||||| | Sbjct 2550 TCAAAGCCATCCATCTCAGTCAACAGCTGATTGAGAGTCTGCTCCCTTTCATCATTCCCA 2609 Query 10934 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | ||| | | | ||| | || ||||| ||||||||||| | || ||||| Sbjct 2610 CCACCAATACCTGTTCCTCTCTGCCTTCCAACGGCATCAATTTCATCAACAAACACGATG 2669 Query 10994 CACGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACAC 11051 || || ||| || ||| |||| |||| ||| ||||| | |||||| |||| Sbjct 2670 CAAGGAGCATTCTCCTTGGC--CTTCTTGAAGAGATCACGGACACGGGAGGCACCAACAC 2727 Query 11052 CCACAAACATTTCCACAAA 11070 | |||||||| ||||| || Sbjct 2728 CAACAAACATCTCCACGAA 2746 >seq353702 Length=449 Score = 93.3 bits (102), Expect = 5e-14 Identities = 270/408 (66%), Gaps = 6/408 (1%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||| ||||| ||||| || | || | ||| |||||| Sbjct 405 GTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCAT 346 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 125876 | || || ||||| | | ||| | | | |||||| | | |||| || | Sbjct 345 CCAGTCGAAGGGGTTGGTGGCGTTGTAGAGCCTGCCGCACCCGAG-CGCCATGAGCAGGC 287 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 | || | |||| |||| ||||||| ||| || |||||| || | ||| | Sbjct 286 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCAACGAGCGCGC 227 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | || |||||||| ||| |||| | ||| || || || || |||| ||||| || Sbjct 226 ACGGCAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACTGCCTCCCTGACGATCTCGA 167 Query 125997 GAATGGTGTCCACC-CCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACTC 126054 | | | | | |||| | | || | ||| | |||| |||| | || || Sbjct 166 AGACGCGGGACTCGTCCAGCT-TGCCCCGGAGGATCTCGTAGAGGAGGCACG-CGAAGTC 109 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||| || || ||||| || |||||||| || || |||||| || || |||||||| Sbjct 108 GCAGTGCAGCCCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAG 49 Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAA 126162 ||||||||||| | |||||| || || || || || ||||||||||| Sbjct 48 CCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAA 1 >seq47147 Length=1785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 237/360 (66%), Gaps = 6/360 (2%) Strand=Plus/Minus Query 10795 GCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGAC 10854 ||| || |||||||| || ||| |||| ||||| || ||||||||| || ||||| || Sbjct 1785 GCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGGCGGTTCGTGGCGGCGATCAC 1726 Query 10855 AACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTG 10914 | || ||| | || | ||||| |||||||| || | || || |||| || || Sbjct 1725 GATGACGCCGCTGTCACCACTGAAGCCGTCCATCTCGGTGAGCAGCTGGTTGAGCGTCTG 1666 Query 10915 TTCGCGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTACCGACGGCGTC 10971 || | || || || ||| | | || || || | ||| ||| ||||||||||| Sbjct 1665 CTCCCTCTCGTCGTTGCCGCCGCCGATGCC---CGTGCCGCGCTGCCGGCCGACGGCGTC 1609 Query 10972 AATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCG 11031 || || |||||||| |||| ||||| || || ||| | ||| | || || Sbjct 1608 GATCTCGTCGATGAACACGAGGCACGGCGCGTTGTCCTTGGCCTTGTTAAACAGGTCCCG 1549 Query 11032 GACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGAT 11091 || | | || || || || || ||||| || | || | | |||| || Sbjct 1548 CACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCCGACCCGGAGAGCGAGAA 1489 Query 11092 GAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 |||||| ||| || || |||||||| || ||| || || |||||||| ||||| || Sbjct 1488 GAAGGGCACGCCGGCCTCCCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCGGTCCCCGG 1429 >seq625560 Length=224 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGG-G 10935 |||||||||||||| || | || || |||||||| || || | ||||||||| || | Sbjct 221 AAGCCATCCATCTCCGTGAGAAGCTGGTTGATGGTCTGCTCCCTCTCATCATTCCCGCCG 162 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 | | | || |||| || ||| | |||||||||||||| ||||| ||||| ||||| || Sbjct 161 CCCATC-CCAGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCAATGAAGACGATGCA 103 Query 10996 CGG 10998 || Sbjct 102 GGG 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592379287234400