Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq113513 129 6e-25 seq6868 123 3e-23 seq307656 109 6e-19 seq385372 102 9e-17 seq5401 102 9e-17 seq83756 91.5 2e-13 seq37865 87.8 2e-12 seq12734 84.2 2e-11 >seq113513 Length=1062 Score = 129 bits (142), Expect = 6e-25 Identities = 159/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| || | ||| ||||||||| || ||||| ||||| || |||| | || || Sbjct 994 CACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTC 935 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| ||||| || ||||| ||||||||||| | | | || |||||||||| Sbjct 934 GAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCCTG 875 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || |||| ||| | | | |||||||| ||||| || | ||||||||| | Sbjct 874 GATCTTAGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCT 816 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 ||||||| || ||||| || ||||| ||||| ||| Sbjct 815 TGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTC 781 >seq6868 Length=3892 Score = 123 bits (136), Expect = 3e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || || ||||| || || || || || |||| || Sbjct 2899 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 2958 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| ||||| ||||||||||| | || | | ||||||||| Sbjct 2959 CAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTG 3018 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 |||||| |||| ||| | | | |||||||| ||||| || | ||||||||| | Sbjct 3019 GATTTTAGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCT 3077 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 ||||||| || ||||| || ||||| ||||| ||| Sbjct 3078 TGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTC 3112 >seq307656 Length=504 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || || | | ||| || || | || ||| ||||| ||||| || || Sbjct 299 ACCTCCCCTCAATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCT 240 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| ||||| || ||||||||||| ||||| || |||||||| | ||| Sbjct 239 TAGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGG 180 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | || || |||||| ||| |||||| |||| | | | ||||| | |||| Sbjct 179 TATGCCTTCTTTGTCC-TGAATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCA 121 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| || ||||||||||| ||||| ||||| || || || ||||| Sbjct 120 CTTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 >seq385372 Length=416 Score = 102 bits (112), Expect = 9e-17 Identities = 129/175 (74%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || | ||||| || || || || | |||| || |||||||| || ||||| Sbjct 174 CTCCTTCTGCACGTTGTAGTCGGCGAGGGTGTGGCCGTCCTCGAGCTGCTTGCCGGCGAA 115 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | || |||||| ||| ||| ||| |||| ||| Sbjct 114 GATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGGATCTTTGCCTTGA-CGT 56 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 | | | |||||||| ||||| || | ||||||||| |||||||| || || Sbjct 55 TGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGT 1 >seq5401 Length=4188 Score = 102 bits (112), Expect = 9e-17 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || || || || || || || || | || || |||||||| |||||||| Sbjct 4124 CTCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 4065 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| | || | || |||||| ||| ||| | || | |||| || Sbjct 4064 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCC-TGAATCTTAGCCTTGA-CG 4007 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | ||||| || ||||| || | |||||||| ||||| || || ||||| Sbjct 4006 TTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTC 3947 Query 42195 ACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 3946 ACGAAGATCTGCAT 3933 >seq83756 Length=1298 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| ||||| || ||||| ||||||||||| | || | || ||||||| Sbjct 1 TCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 60 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| ||| || | | | | ||||| || ||||| || | |||||| Sbjct 61 TCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATG 120 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || ||||| |||||||| ||||| Sbjct 121 GTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 155 >seq37865 Length=1986 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| |||| |||||| || | ||||| || || || || || |||| || |||||| Sbjct 113 TGCAGTGTGGACTCCTTCTGCACGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 54 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 || || ||||| ||||| ||||||||||||| || | || |||||||||| Sbjct 53 TTGCCCGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 3 >seq12734 Length=3143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || ||||| |||| ||||||||||| | || | | ||||||||| | Sbjct 3141 AGCTGCTTCCCGGCGAAGTTGAGCCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGG 3082 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || ||| |||| | | | |||||||| || || |||| |||||||| ||| Sbjct 3081 ATCTTTGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTG 3022 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || ||||| || ||||| ||||| Sbjct 3021 CCCGTCAGGGTCTTGACGAAGATCTGCAT 2993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538689331211200