Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6868 131 2e-25 seq385372 104 2e-17 seq213696 104 2e-17 seq5401 104 2e-17 seq113513 100 3e-16 seq37865 98.7 1e-15 seq307656 95.1 1e-14 seq399903 93.3 4e-14 seq83756 86.0 6e-12 seq32537 86.0 6e-12 seq17435 86.0 6e-12 seq272473 84.2 2e-11 seq59492 84.2 2e-11 >seq6868 Length=3892 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | ||||| || || | |||||| || || || |||||||| || ||| Sbjct 2882 CCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 2941 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||| ||||| | ||||||||||||||||| || ||| Sbjct 2942 AGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGA 3001 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || ||||| ||| || || | || || | | ||||| Sbjct 3002 ATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 3061 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| |||| || || ||||| || ||||| || Sbjct 3062 TCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3111 >seq385372 Length=416 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||| || || || || | |||||| || |||| |||| | |||| Sbjct 194 AGCACGAGGTGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCGAGGGTGTGGCCGTCC 135 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | |||||||||||||||||||| || || || || || || Sbjct 134 TCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCC 75 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| || || | || || | | ||||| || | || | |||| Sbjct 74 TGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTC 15 Query 64412 TTGCCGGTCA 64421 ||||| |||| Sbjct 14 TTGCCCGTCA 5 >seq213696 Length=664 Score = 104 bits (114), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || || || || || || ||||||||||||||||| | |||||| |||| Sbjct 430 AAGCACCAGGTGGATTGTGGACTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCGTC 371 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGA---GCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 || |||||||||||||| | || | || |||||||||| || || || ||||| || Sbjct 370 CTCCAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGCTGGTCCGGCGGGATGCCTTCCTT 311 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||| ||| || | || ||| || || || || | || | Sbjct 310 ATCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGAT 251 Query 64408 GGTCTTGCCGG 64418 ||||||||||| Sbjct 250 GGTCTTGCCGG 240 >seq5401 Length=4188 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | || || || || | || || || || || ||||| || |||||| Sbjct 4159 CCGCCGCGAAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCG 4100 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || ||||||||||| || | ||||| ||||||||||| || || Sbjct 4099 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 4040 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || | || || || ||||| Sbjct 4039 ATGCCCTCCTTATCCTGAATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACC 3980 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||||| || || ||||| || ||||| Sbjct 3979 TCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3933 >seq113513 Length=1062 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || ||||| |||||||| || |||| ||| | | || Sbjct 996 AGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCC 937 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||| ||||||||||| |||| || || || || || Sbjct 936 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCC 877 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || | | ||||| || | || | |||| Sbjct 876 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTC 817 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| || || ||||| || ||||| || Sbjct 816 TTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 782 >seq37865 Length=1986 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | || || || || || | |||||| || ||| Sbjct 137 CCGCCGCGCAGGCGGAGCACGAGGTGCAGTGTGGACTCCTTCTGCACGTTGTAGTCGGCG 78 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || ||||||||||| || | |||||||||||||||||||| || Sbjct 77 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCGGGCGGG 18 Query 64337 ATTCCTTCTTTTTCTTG 64353 || || || || || || Sbjct 17 ATGCCCTCCTTGTCCTG 1 >seq307656 Length=504 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || || |||||| | || || | || |||||| Sbjct 496 GTTGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATTGTTTGCCG 437 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| ||||||||||| || ||||||||||| || || || || || || Sbjct 436 GCGAAAATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGGATCTTCGATTTC 377 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || ||| || || || || | || | || || || |||||||| Sbjct 376 ACATTGTCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCGTCAAAGTC 317 Query 64427 TTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 316 TTGACAAAGATTTGCAT 300 >seq399903 Length=402 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | ||||| || || | |||||| || || || |||||||| ||||| Sbjct 263 CCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCTGCT 204 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || |||||||| ||||| | ||||||||||||||||| || || Sbjct 203 AGCGTCCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 144 Query 64337 ATTCCT 64342 || ||| Sbjct 143 ATGCCT 138 >seq83756 Length=1298 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || ||||||||||| || ||| | ||||| ||||||||||| ||||| || || || || Sbjct 1 TCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 60 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || ||| ||| ||| || | || ||| || ||||| || | || | | Sbjct 61 TCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATG 120 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| | || || || || || ||||| Sbjct 121 GTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 155 >seq32537 Length=2132 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | || || || || | || ||||| || || |||||||| ||||| Sbjct 125 CCGCCGCGAAGACGGAGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCA 66 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || ||||||||||| || | ||||| ||||||||||| ||||| Sbjct 65 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCCGGAGGG 6 Query 64337 ATTCC 64341 || || Sbjct 5 ATGCC 1 >seq17435 Length=2785 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || ||||| | ||| | || || ||||| || ||||||||||| || | |||||| | Sbjct 1828 CTCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAATGTGCGCCCA 1769 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| | |||||| || ||| |||| |||| |||||||| || || || ||||| || Sbjct 1768 TCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGGGGGATGCCTTCCTTG 1709 Query 64349 TCTTG 64353 || || Sbjct 1708 TCCTG 1704 >seq272473 Length=553 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | |||||| || || || |||||||| || || | ||||| |||| Sbjct 295 AGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCC 236 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || |||||||| ||||| | || || ||||||||||| || || |||||| Sbjct 235 TCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATTCCT 185 >seq59492 Length=1577 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | ||||| ||||| | |||||| || || || |||||||| || || Sbjct 302 CCGCCGCGGAGGCGGAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 243 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || |||||||| |||||| | || || ||||||||||| || || Sbjct 242 AGCGTCCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCCGGCGGG 183 Query 64337 ATTCCT 64342 || ||| Sbjct 182 ATGCCT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495484132839200