Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq88849 150 2e-31 seq353702 140 3e-28 seq307656 120 3e-22 seq12173 114 1e-20 seq6868 98.7 1e-15 seq113513 87.8 2e-12 >seq88849 Length=1251 Score = 150 bits (166), Expect = 2e-31 Identities = 307/450 (68%), Gaps = 11/450 (2%) Strand=Plus/Minus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || |||||||| ||||| ||||| ||||||||| | || || || ||| ||| | Sbjct 488 GCGGAGCGCATCGTGGCGTTCGCATGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGC 429 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 |||||||| | | || | | || | ||||||||||| || ||| ||||||| | Sbjct 428 GCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTC 369 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571 || || |||||||| || || ||| ||||| || |||||| |||| ||| | | | Sbjct 368 ATCTCACGCGACGAGGGGCTCCACTGCGACTTCGCCTGCCTCCTCTACGAGATCCTCCGG 309 Query 52572 ACCGAAAAATTG--GATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCG 52629 | || | | || ||| | | || ||| || ||| |||||| || | |||| Sbjct 308 GGC--AAGCTGGACGAGTCGCGCGTGTTC--GAG-ATCGTCAGGGAGGCTGTTGACATCG 254 Query 52630 AAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCA 52689 | ||||| | | ||||||||| || ||| | |||||||||| | || Sbjct 253 AGCGCGAGTTCGTCTGCGACGCGCTGCCATGCGCGCTCGTCGGCATGAACGGCGACCTCA 194 Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG--GCAGCCAAA 52747 || || ||||||||||||| || || || || ||| | || |||||| || || | Sbjct 193 TGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGGCTGCGGC--AG 136 Query 52748 GTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGAC 52807 | || |||||| ||| || || || | ||| | ||| || || |||| ||||| Sbjct 135 GCTCTACAACGCCACCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGAAAGAC 76 Query 52808 CAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||||||| ||||||||||| Sbjct 75 CAACTTTTTCGAGAAGCGCGTCGGCGAGTA 46 >seq353702 Length=449 Score = 140 bits (154), Expect = 3e-28 Identities = 252/361 (70%), Gaps = 13/361 (4%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||||||||| || ||| ||||||| | || || ||||||||||| |||||| ||| Sbjct 52 ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCACGCGACGAAGGGCTGCACTGCGAC 111 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCG-GACACGATCCT 52600 || ||||||||| |||| ||| | | | | || |||| || | | || || Sbjct 112 TTCGCGTGCCTCCTCTACGAGATCCTCCGGGGC---AAGCTGGA--CGAGTCCCGCGTCT 166 Query 52601 --GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCG 52658 ||| || ||| |||||| || | ||||| ||||| | | |||||||||| Sbjct 167 TCGAG-ATCGTCAGGGAGGCAGTTGACATCGAGCGCGAGTTCGTCTGCGACGCGCTGCCG 225 Query 52659 GTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGAT 52718 || ||| | |||||||||| | |||| || ||||||||||||| || || || Sbjct 226 TGCGCGCTCGTTGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGAC 285 Query 52719 CGTCTGTTGGTGCAGCTCGGG--CAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGT 52776 || ||| | || ||||||| | || | | || |||||| ||| || || || | Sbjct 286 CGCCTGCTCATGGCGCTCGGGTGCGGC--AGGCTCTACAACGCCACCAACCCCTTCGACT 343 Query 52777 TTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGT 52836 ||| | ||| || || |||| ||||||||||||||||||||||| |||||||||| Sbjct 344 GGATGGAGCTCATCTCCCTGCAGGGAAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAGT 403 Query 52837 A 52837 | Sbjct 404 A 404 >seq307656 Length=504 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 ||||| || | | | ||||| ||||| || || |||||||| | ||| || ||| || Sbjct 280 ACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTTAGAGTGCGACCGTCTTCT 221 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 ||||||||||| | | || ||||| || ||||| || ||||| ||||||||||| || Sbjct 220 AGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGTATGCCTTCTTTGTCC-TG 162 Query 138526 ATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | |||||| || | | || | ||||| | | |||||| |||| || | ||||| Sbjct 161 AATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCACTTCGAGTGTAATGGTTTT 102 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||||| || || ||||||||||| Sbjct 101 GCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 Score = 109 bits (120), Expect = 5e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || |||||||||||||| | || || ||||| | |||||| |||| Sbjct 495 TTGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATTGTTTGCCGG 436 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | || |||||||| ||||| || || || ||||| ||||| ||| || ||| | Sbjct 435 CGAAAATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGGATCTTCGATTTCA 376 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | || ||| ||||| | || | |||||||| |||| ||| Sbjct 375 CATTG-TCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCGTCAAAGTC 317 Query 138598 TTTACAAAAATCTGCAT 138614 || ||||| || ||||| Sbjct 316 TTGACAAAGATTTGCAT 300 >seq12173 Length=3197 Score = 114 bits (126), Expect = 1e-20 Identities = 302/450 (67%), Gaps = 11/450 (2%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 |||||||| | || |||||||| ||||||||| | || || || ||| ||| | Sbjct 1049 GCCGAGCGACTCGTCGCCTTCGCATGCGTCGAGGGCATATTCTTCTCGGGCTCCTTCTGC 1108 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 |||||||| | | || | | || | ||||||||||| || ||| ||||| | | Sbjct 1109 GCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGTGCTC 1168 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571 || ||||| ||||| || | ||| ||||| || |||||| |||| | | | | Sbjct 1169 ATCTCGCGTGACGAGGGCCGCCACTGCGACTTCGCCTGCCTCCTCTACG-GCCTC-CTCA 1226 Query 52572 ACCGAAAAATTG--GATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCG 52629 || | || ||| || || | || | ||| || || || || || | |||| Sbjct 1227 ACAGCAAGCTTGACGAGTCC--CGCGTCCGCGAG-ATCGTCGCCGACGCCGTCGACATCG 1283 Query 52630 AAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTC-C 52688 | | |||||| | | |||||| || || || | ||||||||||| | | | | Sbjct 1284 AGAGGGAGTTCATCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGC-CGGCCTC 1342 Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGC-CAAA 52747 ||| || ||||||| ||||| || || || || ||| | || |||| ||| || | || Sbjct 1343 ATGGGCCAGTACATTGAGTTCGTCGCAGACCGCCTGCTCATGGCGCTC-GGCTGCGCCAA 1401 Query 52748 GTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGAC 52807 | | |||||| ||| ||||| || | ||| | ||| || || |||||||||| Sbjct 1402 GATGTACAACGCCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGAC 1461 Query 52808 CAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||| || |||||||| |||||||| || Sbjct 1462 CAACTTCTTTGAGAAGCGTGTCGGCGACTA 1491 >seq6868 Length=3892 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||| || || || |||| Sbjct 2915 GACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCG 2974 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || ||||| ||||| |||||| || | Sbjct 2975 AAGATGAGCCGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTGACG 3034 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | ||||||||| | ||| | || || || ||||| || || Sbjct 3035 TTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTC 3094 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 3095 ACGAAGATCTGCAT 3108 >seq113513 Length=1062 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 ||||||||||| ||||||||||| | || | || | |||||||| || || || | Sbjct 978 GACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCCA-TCCTCGAGCTGCTTGCCAGC 920 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 | |||| || ||||| |||||||||| || || || ||||| ||| || || | Sbjct 919 AAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC 860 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| | ||||||||| | ||| | || || || ||||| || || Sbjct 859 GTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTT 800 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 799 CACGAAGATCTGCAT 785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492129898929600