Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq12173 176 4e-39 seq353702 138 1e-27 seq88849 136 4e-27 seq307656 131 2e-25 seq113513 107 2e-18 seq5401 102 8e-17 seq385372 96.9 3e-15 seq87352 96.9 3e-15 seq117604 93.3 4e-14 seq83756 91.5 1e-13 >seq12173 Length=3197 Score = 176 bits (194), Expect = 4e-39 Identities = 356/521 (68%), Gaps = 8/521 (2%) Strand=Plus/Plus Query 47059 TCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACG 47118 |||| | | | ||| ||||||| | ||||||| ||||||||| | || || || Sbjct 978 TCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGTCTGGGCCATGCGCTGGATCGACGGCG 1037 Query 47119 AAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCT 47178 | | || | ||||| || | |||| ||||| |||||||||| | ||||||| Sbjct 1038 GCGAG--CGCT-TCGCCGAGCGACTCGTCGCCTTCGCATGCGTCGAGGGCATATTCTTCT 1094 Query 47179 CGGGCAGCTT-TGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACG 47237 ||||| ||| |||| | || || | | || | || | |||||||||||||| Sbjct 1095 CGGGCTCCTTCTGCGCC-ATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACC 1153 Query 47238 TTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTAC 47297 || ||||| ||| |||||| | ||||| |||| ||| | |||| ||||| ||| | Sbjct 1154 TTCTCCAACGTGCTCATCTCGCGTGACGAGGGCCGCCACTGCGACTTCGCCTGCCTCCTC 1213 Query 47298 TACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAA 47357 ||| | || || | ||| | |||| | || |||| |||| || | ||||| Sbjct 1214 TACGGC-CTCC--TCAACAGCAAGCTTGACGAGTCCCGCGTCCGCGAGATCGTCGCCGAC 1270 Query 47358 GCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATG 47417 ||||||| ||| |||| |||||| || ||| || || ||| | | || || ||| Sbjct 1271 GCCGTCGACATCGAGAGGGAGTTCATCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATG 1330 Query 47418 AACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTA 47477 ||||| | | ||| | ||||||| || || ||||| |||||||||||| | ||| Sbjct 1331 AACGCCGGCCTCATGGGCCAGTACATTGAGTTCGTCGCAGACCGCCTGCTCATGGCGCTC 1390 Query 47478 AAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTC 47537 | ||||||| ||| || ||| || || ||||| | ||| | ||| || || Sbjct 1391 GGCTGCGCCAAGATGTACAACGCCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTG 1450 Query 47538 GAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||||||||||||||| || |||||||| |||||||| || Sbjct 1451 CAGGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGCGACTA 1491 >seq353702 Length=449 Score = 138 bits (152), Expect = 1e-27 Identities = 247/359 (69%), Gaps = 9/359 (3%) Strand=Plus/Plus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 |||||||||||||| || ||||||||| ||||| | |||||||| |||||| | || Sbjct 52 ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCACGCGACGAAGGGCTGCACTGCGAC 111 Query 47283 TTTGCCTGTCTCTACTACAACA--CTA-GAGTCGATCAAAAGTTGGACGTGCCCACCGTC 47339 || || || ||| |||| | | || | | | ||| |||||| | || |||| Sbjct 112 TTCGCGTGCCTCCTCTACGAGATCCTCCGGGGC------AAGCTGGACGAGTCCCGCGTC 165 Query 47340 AGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCC 47399 ||| || | || || || | ||| ||| ||||| || ||| || ||||| Sbjct 166 TTCGAGATCGTCAGGGAGGCAGTTGACATCGAGCGCGAGTTCGTCTGCGACGCGCTGCCG 225 Query 47400 GAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGAC 47459 | | || || ||||||| || | ||||| |||||||||| || ||||||||| Sbjct 226 TGCGCGCTCGTTGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGAC 285 Query 47460 CGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTT 47519 ||||||||| | ||| || || | | ||| || || || || ||||| | Sbjct 286 CGCCTGCTCATGGCGCTCGGGTGCGGCAGGCTCTACAACGCCACCAACCCCTTCGACTGG 345 Query 47520 ATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||| | ||| || || |||| |||||||||||||||||||||||||||||||| || Sbjct 346 ATGGAGCTCATCTCCCTGCAGGGAAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAGTA 404 >seq88849 Length=1251 Score = 136 bits (150), Expect = 4e-27 Identities = 294/435 (68%), Gaps = 11/435 (3%) Strand=Plus/Minus Query 47148 GCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTTTACAT 47206 || ||||| |||||||||| |||||||||||||| ||| |||| | || || | | Sbjct 473 GCGTTCGCATGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCC-ATCTTCTGGCT 415 Query 47207 GAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGA 47266 || | || | |||||||||||||| || ||||||||| ||||| | ||||| Sbjct 414 CAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCACGCGACGA 355 Query 47267 AGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACA--CTA-GAGTCGATCAAAAGTT 47323 || || ||| | |||| ||||| ||| |||| | | || | | | ||| | Sbjct 354 GGGGCTCCACTGCGACTTCGCCTGCCTCCTCTACGAGATCCTCCGGGGC------AAGCT 301 Query 47324 GGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTT 47383 ||||| | | ||| ||| || | || || || | ||| ||| ||||| | Sbjct 300 GGACGAGTCGCGCGTGTTCGAGATCGTCAGGGAGGCTGTTGACATCGAGCGCGAGTTCGT 241 Query 47384 CGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACAT 47443 | ||| || ||||| | | || || ||||||| || | ||||| ||||||| Sbjct 240 CTGCGACGCGCTGCCATGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACAT 181 Query 47444 CGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGA 47503 ||| || |||||||||||||||||| | ||| | || | | ||| || || Sbjct 180 CGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGGCTGCGGCAGGCTCTACAACGCCAC 121 Query 47504 GAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAA 47563 || || ||||| | ||| | ||| || || |||| |||||||||||||||||||| Sbjct 120 CAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGAAAGACCAACTTTTTCGAGAA 61 Query 47564 GCGCGTCGGCGAATA 47578 |||||||||||| || Sbjct 60 GCGCGTCGGCGAGTA 46 >seq307656 Length=504 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| | ||| || || | |||||||||||||| ||||| || |||| | |||||| Sbjct 289 AATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTTAGAGTGCGA 230 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 || ||||| ||||| |||||| | || | || ||||| || || |||||||| || Sbjct 229 CCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGTATGCCTTCT 170 Query 127016 TTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 |||||| ||| ||| || ||||| | || | ||||||| | ||| ||||||| || Sbjct 169 TTGTCC-TGAATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCACTTCGAGTGT 111 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||||||| || ||||| || || ||||||||||| Sbjct 110 AATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 >seq113513 Length=1062 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| ||||| || ||||| || | Sbjct 1011 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCG 952 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || ||||| || ||||| |||| | |||||||| || |||| Sbjct 951 AGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTG 892 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| |||||| | ||||| || Sbjct 891 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTG-TCGATGGTGTCGCTGCTCTCCAC 833 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| || || || || |||||||| Sbjct 832 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 785 >seq5401 Length=4188 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || || || || | | ||||| ||| || ||||| || ||| Sbjct 4129 GTGGACTCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 4070 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || ||||||||||| ||| || || |||| Sbjct 4069 GCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGAATCTTAGCCTTG 4010 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| ||| |||||||| ||| || || | ||| | || ||||||||||| || Sbjct 4009 ACGTTGT-CGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGT 3951 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 3950 CTTCACGAAGATCTGCAT 3933 >seq385372 Length=416 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||||| || | ||| | |||| ||| ||||| || || | ||||| ||| | Sbjct 209 CCCCCGCGTAGGCGGAGCACGAGGTGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCG 150 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | || || ||||| || || ||| |||| | |||||||| ||||| || Sbjct 149 AGGGTGTGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGG 90 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| || ||||| |||| |||| |||||| | ||||| || Sbjct 89 ATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTG-TCGATGGTGTCGCTGCTCTCCAC 31 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | || ||||| ||||| || Sbjct 30 CTCCAGCGTGATGGTCTTGCCCGTCAGGGT 1 >seq87352 Length=1264 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 ||||| ||| || ||||| || | ||| | || | |||||| | || ||||| ||| Sbjct 1244 GTGCGGCCATCCTCAAGCTGCTTGACGGCGAAAATGAGGCGCTGCGGGTCTGGAGGGATG 1185 Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 |||||||||||| ||| || ||||| |||| |||| |||||| | |||||| || Sbjct 1184 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCAGAGGACTCGACCTC 1126 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||| | || |||||||| || || || ||||| |||||||| Sbjct 1125 GAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 1081 >seq117604 Length=1036 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| || || Sbjct 903 CCACCACGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCC 962 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || |||||| |||||| ||||||||||| ||||| Sbjct 963 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCCGGAGGA 1022 Query 127007 ATGCCCTCCTTGTC 127020 |||||||||||||| Sbjct 1023 ATGCCCTCCTTGTC 1036 >seq83756 Length=1298 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||| | |||||||| || ||||| |||||||||||| Sbjct 1 TCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 60 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||| | ||| || || | ||| | Sbjct 61 TCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATG 120 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || || || ||||| |||||||| Sbjct 121 GTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471541185963200