Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq307656 136 4e-27 seq6868 86.0 6e-12 seq5401 86.0 6e-12 >seq307656 Length=504 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||||| || || || || || |||||||||||||| ||||| | || | || || Sbjct 281 CACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTTAGAGTGCGACCGTCTTC 222 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | |||||| || ||| | || | ||||||||||| || || ||||||||||| || || Sbjct 221 TAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGTATGCCTTCTTTGTCCTG 162 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||||| |||| || | ||||| |||| ||| |||||||| |||| ||||| Sbjct 161 AATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCACTTCGAGTGTAATGGTTTT 102 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| |||||||| || || ||||| ||||| Sbjct 101 GCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||||||||| ||||| || || ||||||| ||| | ||| || |||||| Sbjct 502 TGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATTGT 443 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | || |||||||| |||||||| ||||| || || || || || Sbjct 442 TTGCCGGCGAAAATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGGATCTTC 383 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | |||||| || | ||| || || || |||| ||||| || || Sbjct 382 GATTTCACATTGTCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCGTC 323 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || ||||| |||||||| Sbjct 322 AAAGTCTTGACAAAGATTTGCAT 300 >seq6868 Length=3892 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || |||||||| || ||||| ||||| || || ||| | Sbjct 2882 CCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 2941 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| || || || ||| | || | || ||||||||||||||| Sbjct 2942 AGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGA 3001 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || || || ||||| |||| || | || | ||||||| ||| || Sbjct 3002 ATCCCTTCCTTGTCCTGGATTTTAGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCAC 3060 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || ||||| || || || || || || || |||||| Sbjct 3061 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATC 3109 >seq5401 Length=4188 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || || || || ||||| ||||| ||||| || | Sbjct 4159 CCGCCGCGAAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCG 4100 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | || || || ||| | || | || |||||||||||||| Sbjct 4099 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 4040 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || ||||| ||||| || |||| || | || | |||||| || ||||| || Sbjct 4039 ATGCCCTCCTTATCCTGAATCTTAGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCAC 3981 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || | || | || |||||||| || || || || || || |||||| Sbjct 3980 CTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATC 3932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448239256352800