Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq351396 298 7e-76 seq162061 221 1e-52 seq664408 158 1e-33 seq597246 156 5e-33 seq217498 120 4e-22 seq63256 109 7e-19 seq623740 100 4e-16 seq466979 95.1 1e-14 seq171123 93.3 5e-14 seq178439 89.7 6e-13 seq472319 86.0 8e-12 >seq351396 Length=451 Score = 298 bits (330), Expect = 7e-76 Identities = 264/330 (80%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 89 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 148 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 | ||| ||||||| | || ||||| || || | || |||||||||| ||||| | Sbjct 149 ATTAGCTCGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 208 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 || |||||||| |||||||| || |||||||| ||||| || |||| ||| | |||||| Sbjct 209 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 268 Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773 ||||||||| || || || ||||| || || | ||||||||| | ||||| |||||||| Sbjct 269 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 328 Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833 ||| ||| ||||||||||| | || ||||| || || |||||||| || || || || Sbjct 329 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 388 Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACC 7863 |||||||| |||||||| || || ||||| Sbjct 389 AGTCTCTTCCTCTTGACCAAATTTGTAACC 418 >seq162061 Length=815 Score = 221 bits (244), Expect = 1e-52 Identities = 252/336 (75%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 ||||| || ||||| | ||| || ||||| || || || |||||||| || |||| || Sbjct 550 TCACCGTCCTCAAATAGAGTGTTTTCTACGGTCGCTCCATGAATAGCGCATAGCAGAGCC 491 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 | ||||| | || || || |||||||||||||| ||||| | |||||| || || || Sbjct 490 GCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAAT 431 Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAAC 6817 || || | ||| || | ||| || ||||| ||||| || ||||| ||||||||||||| Sbjct 430 CCTTGGAAGAAAAGGATGAATCGAAATATTGCTGCTACGCCAAAACTCGGCGCAAAGAAC 371 Query 6818 CAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCA 6877 |||| || || || || ||||| || || || ||||| ||||| || || || |||||| Sbjct 370 CAACCAGATTGCCCCAGTGGATAAATAAGGAATACAGAAACAAAAACCGCGATTGGACCA 311 Query 6878 GAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGCGATCTCAAACTGCCG 6936 || || | ||||||||| || || || | | || ||| || || | ||||| || || Sbjct 310 GAGAATGAGATTGCATTATAAGGCCGCA-ATTGAACAGACCGAGCAAGTTCAAATTGGCG 252 Query 6937 AAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAG 6972 | |||||||||||| || ||||| || |||||||| Sbjct 251 TAACATGAAACCTATTAGTGCAAAAGCCCCGTGGAG 216 >seq664408 Length=200 Score = 158 bits (174), Expect = 1e-33 Identities = 150/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 7946 CCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCT 8005 || || || |||||||| || || | ||||||||| || ||||| ||||||||||||||| Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 8006 GCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAG 8065 || ||||| |||| ||| ||||||| ||||||| || || | ||||||| | |||||| Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 8066 AAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCA 8125 || |||||||| | ||| || | | ||| ||||||| || || ||||| ||||| Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 181 Query 8126 GAGTATGCTACA 8137 |||||||| ||| Sbjct 182 GAGTATGCAACA 193 >seq597246 Length=243 Score = 156 bits (172), Expect = 5e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 8122 AGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTC 8181 ||| |||||||| ||| ||||| ||||||||||| | |||| || |||||||||||| Sbjct 1 AGCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTC 60 Query 8182 ACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACC 8241 ||||||||| || | | ||| | | |||||| | | || || | ||||||| Sbjct 61 ACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACC 120 Query 8242 ACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACC 8301 ||| ||||| | ||||||||||| ||| || |||||||| || || || ||||| | || Sbjct 121 ACCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCC 180 Query 8302 AATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATA 8352 || || |||| ||||| || |||||||||||| || ||||| ||||| Sbjct 181 GATCGCCGCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATA 231 >seq217498 Length=656 Score = 120 bits (132), Expect = 4e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 8312 GAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACG 8371 |||| ||||| || ||||||||||| || ||||| ||||| | | ||||||| || Sbjct 529 GAAGTAGGAATAATAGCACCAGAGAGAATATTGTTTCCATAAAGTAAAGAACCAGAAACA 470 Query 8372 GGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACA 8430 || ||||| || || ||||| || || ||||| ||||||| ||| |||| || || ||| Sbjct 469 GGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA 410 Query 8431 AATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACG 8490 | || || | | | ||||| ||||||| ||||||||||| |||| || ||||| Sbjct 409 GA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 351 Query 8491 ATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || | ||| |||| |||||| ||||| Sbjct 350 GTTTTCAGTGCTAGTTATCCAGTTGCAGAA 321 >seq63256 Length=1526 Score = 109 bits (120), Expect = 7e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 6852 CAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGA 6911 |||| ||||| || || || ||| |||| || | ||||||||| || || || | | || Sbjct 216 CAGAAACAAAAACCGCGATTGGATCAGAGAATGAGATTGCATTATAAGGCCGCA-ATTGA 158 Query 6912 CTAGAC-GTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGG 6970 |||| | || | ||||| || || | |||||||||||| || ||||| || |||||| Sbjct 157 ACAGACCGAGCAAGTTCAAATTGGCGTAACATGAAACCTATTAGTGCAAAAGCCCCGTGG 98 Query 6971 AGCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCT 7030 || || ||||| | ||||| || || | || |||||| |||||||| || ||| Sbjct 97 AGAGCTACAAACGTCCATAAACCGCCTAACTGACACCAGCGAGTAAAATCTCCTTGTGCT 38 Query 7031 TCTGGACCCCATAGAAG 7047 || || |||||||| || Sbjct 37 TCCGGCCCCCATAGTAG 21 >seq623740 Length=225 Score = 100 bits (110), Expect = 4e-16 Identities = 137/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 6716 ACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAG 6775 || |||||||||||||| ||||| | |||||| || || || || || | ||| || | | Sbjct 2 ACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATG 61 Query 6776 AAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGA-----CTGTC 6830 || || ||||| ||||| || ||||| ||||||||||||||||| | | | | Sbjct 62 AATCGAAATATTGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCGAATCGCCCCACC 121 Query 6831 CGAGAGGATACATGAGAAAGACAG--ACACAAAGACAGCAATGGGACCAGAAAACGCGAT 6888 | || ||||| || || || |||| ||| ||| || || || ||| ||| || | ||| Sbjct 122 CCAGTGGATAAATAAGGAATACAGAAACAAAAAAACCGCGAT-TGACTAGAGAATGAGAT 180 Query 6889 TGCATTGTA 6897 ||||| || Sbjct 181 GGCATTATA 189 >seq466979 Length=342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 6499 AAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGA 6558 ||| |||||||||||||||| |||||| |||||| || || | ||||||||| || || Sbjct 118 AAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGA 177 Query 6559 CCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGC 6618 ||| || | ||||| |||||||| ||||| || || || |||| || || | ||| || Sbjct 178 CCAAAAGCAGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 237 >seq171123 Length=784 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 7544 TCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGG 7603 || |||||||||||||||||||| || | |||||| |||||||| |||| | ||||||| Sbjct 784 TCTAGAGGGAAGTTGTGAGCATTTCGTTTGTGCATTACTTCCATACCAAAATTAGCACGG 725 Query 7604 TTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGAC--CATCAATGATGGACTGGT 7661 |||| | || | || || || | || || ||||||| ||||| | || |||| Sbjct 724 TTGATGATATCATCTCAAGTATTAATAACGCGGCCTTGACTGTATCAACTACAGATTGGT 665 Query 7662 TGAAGTTGAAACCGTTGAGGTTG 7684 | || | |||||| || |||||| Sbjct 664 TAAAATGGAAACCATTTAGGTTG 642 >seq178439 Length=759 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 6284 ACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCCACTGGTGCCATCCAGGCACGT 6343 || || ||||| |||| || |||||||| |||| | ||||||||| |||| Sbjct 755 ACCTCCTCAGGGAATATAAGATTTTCATG------ATCCTAAGCTGCCATCCACCCACGA 702 Query 6344 AGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTCTCGAACTCTGGATCCTCCGCT 6403 | ||| ||||| || || || || ||||| ||||| ||||| || || |||| |||| | Sbjct 701 ATACCCTCATTTAAAAGAATATTTTTGGTGTAGAAAGTCTCAAATTCACGATCTTCCGTT 642 Query 6404 GCTCTGATCTCTTGTGAAACAAAGTCATA 6432 || | ||| || | |||||||||||||| Sbjct 641 GCACGGATTTCCTAGGAAACAAAGTCATA 613 >seq472319 Length=337 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7748 AAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAG 7807 |||||||| | ||||| ||||||||||| ||| ||||||||||| | | ||||| Sbjct 227 AAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATTGGCCAAAA 286 Query 7808 TATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTT 7857 || || |||||||| || || || || ||||||| |||||||| || || Sbjct 287 TAACCATGAGCAGCCACAATATTATAAATCTCTTCCTCTTGACCAAATTT 336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616944211259200