Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq12173 159 4e-34 seq88849 145 9e-30 seq353702 102 1e-16 seq47147 100 3e-16 seq7224 93.3 5e-14 seq625560 86.0 8e-12 >seq12173 Length=3197 Score = 159 bits (176), Expect = 4e-34 Identities = 310/452 (69%), Gaps = 8/452 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| |||||||| |||||||| ||||| || | ||| ||| |||||| Sbjct 1492 GTAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1433 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349 | || || ||||| | ||| | || ||||| | || | | |||| || | Sbjct 1432 CCAGTCGAACGGGTTGGCGGCGTTGTACATC-TTGGCGCAGCCGAGCGCCATGAGCAGGC 1374 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | || | |||| |||||||||||| ||| | | |||||| |||| |||| | Sbjct 1373 GGTCTGCGACGAACTCAATGTACTGGCCCATGAGGCCGGCGTTCATGCCGACGAGGGCGC 1314 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | ||||||||||| |||||||| || |||| ||||| || || || ||||| || Sbjct 1313 AGGGGAGCGCGTCGCAGATGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGC 1254 Query 127470 GAATAGTGTCCACCCCAGGT---CTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACT 127526 | | | | | || | || ||| | | | || ||| || || || | Sbjct 1253 GGACGCGGGACTCGTCAAGCTTGCTGTTGAGGAGGCCGTAGAGGAGG--CAG-GCGAAGT 1197 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | |||| | ||||||||||| |||||||| | || |||||| || || ||||||| Sbjct 1196 CGCAGTGGCGGCCCTCGTCACGCGAGATGAGCACGTTGGAGAAGGTGAGGCCGGGCATGA 1137 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 | ||||||||||| | |||||| || || || || ||||| |||||||| || ||||| | Sbjct 1136 GCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAATATGCCCTCGA 1077 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 | || ||||| || | || |||||||| ||| Sbjct 1076 CGCATGCGAAGGCGACGAGTCGCTCGGCGAAG 1045 >seq88849 Length=1251 Score = 145 bits (160), Expect = 9e-30 Identities = 308/454 (68%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||| ||||| ||||| || | ||| ||| |||||| Sbjct 45 GTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCAT 104 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 127349 | || || ||||| | | ||| | | | ||| || | | |||| || | Sbjct 105 CCAGTCGAAGGGGTTGGTGGCGTTGTAGAGCCTGCCGCAGCCGAG-CGCCATGAGCAGGC 163 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | || | |||| |||| ||||||| ||| || |||||| |||| ||| | Sbjct 164 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGC 223 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 |||| |||||||| ||| |||| | ||| ||||| ||||| |||| ||||| || Sbjct 224 ATGGCAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACAGCCTCCCTGACGATCTCG- 282 Query 127470 GAATAGTGTCCACCCCAGGTCTA--TTGC---GTAAAGTCTTGAAGAGTTCCACAGCAAA 127524 || | | || | ||| | |||| | | ||| | |||| || || Sbjct 283 -AACACGCGCGACTC---GTCCAGCTTGCCCCGGAGGATCTCGTAGAGGAGGCAGGCGAA 338 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || |||||| |||||||| || |||||||| || || |||||| || || ||||| Sbjct 339 GTCGCAGTGGAGCCCCTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAT 398 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 ||| ||||||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 399 GAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 458 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || |||||||| | | ||||| || ||| Sbjct 459 GACGCATGCGAACGCCACGATGCGCTCCGCGAAG 492 >seq353702 Length=449 Score = 102 bits (112), Expect = 1e-16 Identities = 272/408 (67%), Gaps = 6/408 (1%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||| ||||| ||||| || | ||| ||| |||||| Sbjct 405 GTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCAT 346 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 127349 | || || ||||| | | ||| | | | |||||| | | |||| || | Sbjct 345 CCAGTCGAAGGGGTTGGTGGCGTTGTAGAGCCTGCCGCACCCGAG-CGCCATGAGCAGGC 287 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | || | |||| |||| ||||||| ||| || |||||| || | ||| | Sbjct 286 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCAACGAGCGCGC 227 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || |||||||| ||| |||| | ||| ||||| || || |||| ||||| || Sbjct 226 ACGGCAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACTGCCTCCCTGACGATCTCGA 167 Query 127470 -GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTC-CACAGCAAACTC 127527 || | | | |||| | | || | ||| | |||| ||| || || || Sbjct 166 AGACGCGGGACTCGTCCAGCT-TGCCCCGGAGGATCTCGTAGAGGAGGCAC-GCGAAGTC 109 Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587 ||| || || ||||| || |||||||| || || |||||| || || |||||||| Sbjct 108 GCAGTGCAGCCCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAG 49 Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 127635 ||||||||||| | |||||| || || || || ||||| |||||||| Sbjct 48 CCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAA 1 >seq47147 Length=1785 Score = 100 bits (110), Expect = 3e-16 Identities = 240/360 (67%), Gaps = 6/360 (2%) Strand=Plus/Minus Query 12710 GCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGAC 12769 ||| || |||||||| || ||| |||| ||||| || ||||||||| || ||||| || Sbjct 1785 GCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGGCGGTTCGTGGCGGCGATCAC 1726 Query 12770 AACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTG 12829 | || ||| | || | |||||| |||||||| || | || || |||| || || Sbjct 1725 GATGACGCCGCTGTCACCACTGAAGCCGTCCATCTCGGTGAGCAGCTGGTTGAGCGTCTG 1666 Query 12830 TTCACGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTACCGACGGCGTC 12886 || | || || || ||| | | || || || | ||| ||| ||||||||||| Sbjct 1665 CTCCCTCTCGTCGTTGCCGCCGCCGATGCC---CGTGCCGCGCTGCCGGCCGACGGCGTC 1609 Query 12887 AATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCG 12946 || ||||| ||||| |||| ||||| || || ||| | ||| | || || Sbjct 1608 GATCTCGTCGATGAACACGAGGCACGGCGCGTTGTCCTTGGCCTTGTTAAACAGGTCCCG 1549 Query 12947 CACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGAT 13006 ||| | | || || || || || |||||||| | || | | |||| || Sbjct 1548 CACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCCGACCCGGAGAGCGAGAA 1489 Query 13007 GAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 |||||| ||| || || |||||||| || ||| || || |||||||| ||||| || Sbjct 1488 GAAGGGCACGCCGGCCTCCCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCGGTCCCCGG 1429 >seq7224 Length=3831 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || |||||||||||||||||||| || ||||||| || || || | |||||||||| | Sbjct 2550 TCAAAGCCATCCATCTCAGTCAACAGCTGATTGAGAGTCTGCTCCCTTTCATCATTCCCA 2609 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | ||| | | | ||| | || ||||| |||||||| |||| || ||||| Sbjct 2610 CCACCAATACCTGTTCCTCTCTGCCTTCCAACGGCATCAATTTCATCAACAAACACGATG 2669 Query 12909 CACGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACAC 12966 || || ||| || ||| |||| |||| ||| || || | |||||| |||| Sbjct 2670 CAAGGAGCATTCTCCTTGGC--CTTCTTGAAGAGATCACGGACACGGGAGGCACCAACAC 2727 Query 12967 CCACAAACATCTCCACAAA 12985 | |||||||||||||| || Sbjct 2728 CAACAAACATCTCCACGAA 2746 >seq625560 Length=224 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGG- 12849 ||||||||||||||| || | || || |||||||| || || | ||||||||| || Sbjct 222 GAAGCCATCCATCTCCGTGAGAAGCTGGTTGATGGTCTGCTCCCTCTCATCATTCCCGCC 163 Query 12850 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 || | | || |||| || ||| | |||||||||||||| || |||||||| ||||| | Sbjct 162 GCCCATC-CCAGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCAATGAAGACGATGC 104 Query 12910 ACGG 12913 | || Sbjct 103 AGGG 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608398372168800