Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq88849 161 2e-34 seq353702 140 5e-28 seq12173 136 6e-27 >seq88849 Length=1251 Score = 161 bits (178), Expect = 2e-34 Identities = 502/765 (66%), Gaps = 24/765 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||||||||||||||| |||| || ||| || ||||| | |||| ||||| Sbjct 60 CTTCTCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTT 119 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| || | | ||||| ||| |||| | ||| || || || || Sbjct 120 GGTGGCGTTGTAGAGCCTGCCGCAGCCGAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 179 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| || ||||| || | Sbjct 180 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCATGGCAGCGCGTCGCA 239 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC- 159887 | ||||| ||| || || || || || | || |||| ||| ||||| || | Sbjct 240 GACGAACTCGCGCTCGATGTCAACAGCCTCCCTGACGATCT-CGA-ACACGCGCGACTCG 297 Query 159888 -CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 || |||||||| | | || | | |||||||| || ||||||||||| || ||| Sbjct 298 TCCAGCTTGCCCCGGAGGATCTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGCCCC 354 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 ||||| || ||||||| ||||||||| | | ||||||| ||||||| ||| ||| ||| Sbjct 355 TCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCCCCCGCTTCTTG 414 Query 160007 AGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGC 160065 ||||| || |||| |||| ||| | | | | || ||||| ||||| ||| || ||||| Sbjct 415 AGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCATGCGAACGC 473 Query 160066 CACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 ||||| | ||| | || ||| | | | | | | |||| | ||||| || | Sbjct 474 CACGATGCGCTCCGC----GAAGCGCTCGCCGCCGTCGATCCAGCGGAGCGCCCAGTCGG 529 Query 160125 CCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCC 160180 || ||||| ||||||| ||| |||| |||| || | | ||||| ||| Sbjct 530 CC----TTGCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCG 585 Query 160181 TTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCG 160240 | || ||| || | || ||| ||||||||| || | ||| | || ||| Sbjct 586 GCGGCGTCGCGGATGTAGGTCTCGATGAGCAGCGAGTACATCTCCGAGTGGATGTTCTCG 645 Query 160241 ATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAAC 160300 ||||| ||||| ||| |||||| |||||| |||||| || |||| Sbjct 646 ATGGCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCCACCTGCACGTCGGACATGAAG 705 Query 160301 CTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 | ||| | || || | || | ||||||| ||| || ||||| || | |||||| Sbjct 706 C-GGGACGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTG 764 Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTG 160404 |||||||| || | |||| | | | |||| | | |||||||| Sbjct 765 GGAGATGAAGTGGCGCTCGCCGTCGGTGAGGGTGGTGTCCCAGTG 809 >seq353702 Length=449 Score = 140 bits (154), Expect = 5e-28 Identities = 265/384 (69%), Gaps = 12/384 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||||||||||||||| |||| || ||| || ||||| | |||| ||||| Sbjct 390 CTTCTCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTT 331 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| || | | ||||| ||| |||| | ||| || || || || Sbjct 330 GGTGGCGTTGTAGAGCCTGCCGCACCCGAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 271 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCCG 159827 |||||| | ||| | || | ||| || || | ||| | |||| ||||| || Sbjct 270 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCAACGAGCGCGCACGGC-AGCGCGTCGC 212 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGT 159884 | | ||||| ||| || || || || || | || |||| |||| || |||| Sbjct 211 AGACGAACTCGCGCTCGATGTCAACTGCCTCCCTGACGATCTCGAAGACGCGGGACTCGT 152 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 || |||||||| | | || | | ||||||||||| |||||||||||||| | Sbjct 151 ---CCAGCTTGCCCCGGAGGATCTCGT---AGAGGAGGCACGCGAAGTCGCAGTGCAGCC 98 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | ||||| || ||||||| ||||||||| | | ||||||| ||||||| ||| ||| | Sbjct 97 CTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCCCCCGCTTCT 38 Query 160005 TGAGCCAAAAAATGGCCGCAAAAG 160028 ||||||| || |||| |||| ||| Sbjct 37 TGAGCCAGAAGATGG-CGCAGAAG 15 >seq12173 Length=3197 Score = 136 bits (150), Expect = 6e-27 Identities = 496/764 (65%), Gaps = 28/764 (4%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGAC-ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTG 159686 ||||| ||| | || | ||| |||||| || |||||||||||||||| || ||| || Sbjct 1498 CTTCTGGTAGT-CGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGA 1440 Query 159687 ATTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCA 159746 ||||| | |||| ||||| ||| || ||| | | ||||| ||| | Sbjct 1439 GCTCCATCCAGTCGAACGGGTTGGCGGCGTTGTACATCTTGGCGCAGCCGAGCGCCATGA 1380 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA 159806 ||| | |||||| || || || ||||| | ||| | | ||| || || | | Sbjct 1379 GCAGGCGGTCTGCGACGAACTCAATGTACTGGCCCATGAGGCCGGCGTTCATGCCGACGA 1320 Query 159807 GCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAA 159866 | ||||||||| || | | |||||| |||| || ||||| || |||| || | Sbjct 1319 GGGCGCAGGGGAGCGCGTCGCAGATGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGA 1260 Query 159867 TCT-GCGAGACACGT---TCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGG 159922 ||| ||| ||| || |||| | |||||| | | || | | | |||||| Sbjct 1259 TCTCGCG-GACGCGGGACTCGT---CAAGCTTGCTGTTGAGGAGGCCGT---AGAGGAGG 1207 Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || || ||||||||||| | |||||||| || ||||||| | ||||||| | | ||||| Sbjct 1206 CAGGCGAAGTCGCAGTGGCGGCCCTCGTCACGCGAGATGAGCACGTTGGAGAAGGTGAGG 1147 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAA 160041 || ||||||| ||| ||| |||||||| || |||| |||| ||| | | | | || || Sbjct 1146 CCGGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 1088 Query 160042 GATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCAT 160100 || ||||| ||| || || || ||||| | ||| | || ||| | | | | | Sbjct 1087 TATGCCCTCGACGCATGCGAAGGCGACGAGTCGCTCGGC----GAAGCGCTCGCCGCCGT 1032 Query 160101 GGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACG 160156 | |||| | ||||||| | ||| ||||| ||||||| | | |||||| Sbjct 1031 CGATCCAGCGCATGGCCCAGACGGCC----TTGCGGCGCACGGCGGGGACGGTGTCGACG 976 Query 160157 GCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAG 160216 ||| || | | ||||| ||| | || ||| || | | |||| |||| Sbjct 975 GCGCGGAAGAGGCGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAG 916 Query 160217 TACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC 160276 ||||| || | ||| | || |||||||| ||||| ||| |||||| ||||| Sbjct 915 TACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCG 856 Query 160277 AGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCG 160336 ||| || || ||||||| | || || | || | ||||||| | Sbjct 855 GCGACCTGGACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGGACGATGCCGTCGGAG 796 Query 160337 GCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTC 160380 || || ||||| || | |||||| |||||||| || | |||||| Sbjct 795 GCGGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTC 752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788533743860800