Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6868 145 9e-30 seq113513 136 4e-27 seq385372 132 5e-26 seq138762 132 5e-26 seq5401 125 8e-24 seq37865 100 3e-16 seq307656 93.3 5e-14 seq88183 89.7 6e-13 seq88253 87.8 2e-12 seq272473 86.0 7e-12 seq213696 86.0 7e-12 seq99491 84.2 2e-11 seq12734 84.2 2e-11 seq83756 82.4 9e-11 >seq6868 Length=3892 Score = 145 bits (160), Expect = 9e-30 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| ||||| |||||||||| || ||||| |||| || Sbjct 2899 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 2958 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| |||||||| || | ||||||||||| | ||| | | ||||||||| Sbjct 2959 CAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTG 3018 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||| || ||||| ||| | | | |||||||| ||||| |||| ||||||||| | Sbjct 3019 GATTTTAGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCT 3077 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||||||||| || || || ||||| ||||| || Sbjct 3078 TGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3111 >seq113513 Length=1062 Score = 136 bits (150), Expect = 4e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||||||||| |||||||| | || || | | || || Sbjct 994 CACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTC 935 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| || || || | |||||||||||| | | | || |||||||||| Sbjct 934 GAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCCTG 875 Query 46504 GATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| ||||| ||| | | | |||||||| ||||| |||| ||||||||| | Sbjct 874 GATCTTAGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCT 816 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||||||||| || || || ||||| ||||| || Sbjct 815 TGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 782 >seq385372 Length=416 Score = 132 bits (146), Expect = 5e-26 Identities = 136/175 (78%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || | |||||||||| || ||| | |||| |||||||||||||||||||| Sbjct 174 CTCCTTCTGCACGTTGTAGTCGGCGAGGGTGTGGCCGTCCTCGAGCTGCTTGCCGGCGAA 115 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| ||| | || |||||| ||| |||||| ||||| ||| Sbjct 114 GATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGGATCTTTGCCTTGA-CGT 56 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | | | |||||||| ||||| |||| ||||||||| ||||||||||| || Sbjct 55 TGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGT 1 >seq138762 Length=915 Score = 132 bits (146), Expect = 5e-26 Identities = 172/234 (74%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || || | ||| || |||| || |||||| || | |||||||| | Sbjct 713 TGCCCCCACGTAGGCGGAGCACGAGGTGCAGCGTGGACTCCTTCTGCACGTTGTAGTCAG 654 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC-GGCGAATATCAAGCGCTGCTGGTCGGCC 46483 | || ||||| |||| ||||||||||| || |||||| || | ||||||||| | | | Sbjct 653 AGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCCGGCGAAGATGAGACGCTGCTGGCCCGGC 594 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTC 46542 || | || || ||||||| |||||| ||| | ||| | || | ||||||| || Sbjct 593 GGGATGCCCTGCTTGTCCTGGATCTTAGCCTTAA-CGTTGTCAATGGTGTCGCTGCTCTC 535 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||| |||| ||||||||| ||||||||||| || || || ||||| ||||| || Sbjct 534 CACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 481 >seq5401 Length=4188 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || ||||| | || ||||| | || |||||||||||||| ||||| Sbjct 4124 CTCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 4065 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | ||| | || |||||| ||| ||||| ||||| ||| Sbjct 4064 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGAATCTTAGCCTTGA-CGT 4006 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| |||| |||||||| ||||| ||||| || || | Sbjct 4005 TGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCA 3946 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 3945 CGAAGATCTGCAT 3933 >seq37865 Length=1986 Score = 100 bits (110), Expect = 3e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| ||| |||||| || | |||||||||| || ||||| |||| || Sbjct 120 CACGAGGTGCAGTGTGGACTCCTTCTGCACGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 61 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 |||||||||||| ||||| || | ||||||||||||| ||| | || |||||||||| Sbjct 60 GAGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 3 >seq307656 Length=504 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||| || ||||| | || || | || ||||||||||| Sbjct 490 TCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATTGTTTGCCGGCGAAA 431 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | ||| | | ||||||||| ||||||| || | | Sbjct 430 ATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGGATCTTCGATTTCACATTG 371 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || || | || || ||||| ||||||| || || ||| Sbjct 370 TCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCGTCAAAGTCTTGACA 311 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 310 AAGATTTGCAT 300 >seq88183 Length=1257 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||| | ||||||||||||||||||| |||||| | || ||||| | || |||||| Sbjct 782 AGATGAAGGGTACTCTCCTTTTGGATATCGTAGTCAGCCAGGGTGCGTCCATCCTCGAGC 723 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG-AT 46506 |||||||| || ||| | | | |||||||| || | ||| ||| |||| || Sbjct 722 TGCTTGCCAGCAAATGTGAGGTCTTGCTGGTCTAGAGGGAATCTCCAATTG-GCATGAAT 664 Query 46507 CTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||| ||||| ||| | || || |||| || || || | |||||||| || Sbjct 663 CTTAGCCTTGACAGTCTTGATGGTATCGGAGCTC---TCAACTTCAAGGGTGATGGTCTT 607 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || || |||||||| | ||| Sbjct 606 GCCCGTGAGTGTCTTGACAAAGATCTCCAT 577 >seq88253 Length=1256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| ||||| || |||||| ||||| ||||| || | || ||||| | || || Sbjct 1158 CACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTC 1217 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||||||||| ||||| |||| |||||||||||| Sbjct 1218 GAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 1253 >seq272473 Length=553 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| |||||||||| || ||||| |||| || Sbjct 293 CACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTC 234 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| |||||||| |||| ||||||||||| | ||| Sbjct 233 CAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 192 >seq213696 Length=664 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/186 (70%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | ||| |||||| || || ||||| || | || ||||| |||| || Sbjct 427 CACCAGGTGGATTGTGGACTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCGTCCTC 368 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGC---GCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 ||||||||||||||||| |||| | |||||||||| | ||| | || ||||| || Sbjct 367 CAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGCTGGTCCGGCGGGATGCCTTCCTTATC 308 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | ||||||| ||| | | | | ||||| || || || || | |||||||| Sbjct 307 CTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGT 248 Query 46561 TTTGCC 46566 ||||| Sbjct 247 CTTGCC 242 >seq99491 Length=1162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | || | |||||| || | || |||||| ||||| |||||||||| Sbjct 899 TGCCGCCTCGGAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 840 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || |||||||| |||||||| |||| ||||||||||| | || Sbjct 839 CAAGCGTGCGGCCTTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCTGGCG 780 Query 46485 G 46485 | Sbjct 779 G 779 >seq12734 Length=3143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| |||||||| | | ||||||||||| | ||| | | ||||||||| | Sbjct 3141 AGCTGCTTCCCGGCGAAGTTGAGCCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGG 3082 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | |||||||| || || || | |||||||| ||| Sbjct 3081 ATCTTTGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTG 3022 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || || ||||| ||||| Sbjct 3021 CCCGTCAGGGTCTTGACGAAGATCTGCAT 2993 >seq83756 Length=1298 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| || || || || | |||||||||||| | || | || ||||||| Sbjct 1 TCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 60 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | | | | ||||| || ||||| || | |||||| Sbjct 61 TCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATG 120 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || || |||||||| ||||| Sbjct 121 GTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560531518533600