Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq307656 113 2e-19 seq1192 100 1e-15 seq8754 84.2 9e-11 >seq307656 Length=504 Score = 113 bits (124), Expect = 2e-19 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || ||||| ||||| ||||| || || || || | || Sbjct 72 ATGCAGATTTTCGTCAAGACTCTAACTGGCAAAACCATTACACTCGAAGTGGAGGCTTCG 131 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || ||||||||| || || ||||| || || || || || Sbjct 132 GACACTATTGATAATGTCAAGTCAAAAATTCAGGACAAAGAAGGCATACCACCAGACCAG 191 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | |||||| | || |||||||| ||||| || | ||| | || |||||| Sbjct 192 CAACGTCTCATTTTCGCTGGTAAACAACTAGAAGACGGTCGCACTCTAAGCGACTATAAT 251 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | || || | || ||||||||||| | ||| |||| ||| Sbjct 252 ATCCAAAAAGAGTCTACCCTTCACTTAGTGCTCAGATTGAGGGGA 296 Score = 96.9 bits (106), Expect = 1e-14 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| |||||||||||||| ||||| || || | ||| Sbjct 300 ATGCAAATCTTTGTCAAGACTTTGACGGGTAAAACTATTACCCTTGAGGTAGAGGCGTCT 359 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| || || || || |||||||||||||| || || || Sbjct 360 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGAATTCCGCCAGACCAG 419 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 || ||| | |||||| | || |||||| | || ||||| Sbjct 420 CAGCGTCTCATTTTCGCCGGCAAACAATTAGAGGATGG 457 >seq1192 Length=6114 Score = 100 bits (110), Expect = 1e-15 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 || || |||||||| ||||| ||| || |||| | |||| | || || ||| Sbjct 3833 ACCAAGATGAAAGAGACAGCTGAATCTTACCTTGGCAAGTCTATTACCAAGGCTGTGATT 3774 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 |||||||| || |||||||||||||| || ||||| || || || ||||| || | |||| Sbjct 3773 ACTGTTCCAGCATATTTCAATGATGCTCAGCGGCAGGCCACCAAGGATGCTGGTCGTATT 3714 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| | ||||| | || || ||||| || || || |||||||| | |||||| Sbjct 3713 GCTGGGCTTGATGTTGAGAGGATCATCAATGAGCCAACTGCTGCTGCTCTGTCTTATGGA 3654 >seq8754 Length=3589 Score = 84.2 bits (92), Expect = 9e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || ||||| || || ||||||||||||||||| || || || || || || ||||| Sbjct 2051 GCTGTTATTACAGTGCCAGCTTATTTCAATGATGCCCAGCGCCAGGCTACCAAGGATGCT 1992 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || |||||||| | | || || | ||||| ||||| || || || |||||||| Sbjct 1991 GGTAGGATTGCTGGACTGGAGGTGCTCAGGATTATCAATGAGCCCACTGCTGCTGCTCTG 1932 Query 451442 GCATATGGA 451450 |||||||| Sbjct 1931 TCATATGGA 1923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1958854791427440