Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq13300 132 4e-25 seq49510 123 2e-22 seq2610 118 8e-21 seq1192 100 2e-15 seq3253 98.7 7e-15 seq4181 87.8 1e-11 seq1011 86.0 5e-11 >seq13300 Length=3096 Score = 132 bits (146), Expect = 4e-25 Identities = 311/465 (67%), Gaps = 16/465 (3%) Strand=Plus/Plus Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 ||||| || || |||| || |||| ||||| ||||| || | | || || || | Sbjct 1048 TCAATGCCCTCATACAACGAGTCAATCTCAATGGTAGTCTGGGCAGTGGAGGAGAGGGTC 1107 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AGGCTT----TTGCTGATTGAT 517967 | || || | ||||| |||||||| || || || | || | | |||| | | ||| Sbjct 1108 CTCTTCGCCCTCTCACAAGCTGTCCTCAGCCTCCGGAGAGCCCTGGGGTTGCCGCT-GAT 1166 Query 517968 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTAT 518027 ||| |||| | || |||||||| |||| ||| | | || | | || | Sbjct 1167 ----ATCCTTTTTGTTCTTCCTCTTGAATTCTTGGACAAAGTGGTTGACCATTCTGTTGT 1222 Query 518028 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 518087 |||| || ||||| || | | ||| | || | || | | || | || | || | Sbjct 1223 CAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCAGTGGACTTGACCTCAAAGATACCTT 1282 Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147 | |||| | | ||| | |||||| ||| ||||| || | || || || || |||| Sbjct 1283 CCTCAATGGTAAGAAGGGAAACATCAAAGGTGCCACCTCCAAGGTCGAAGATGAGAACAT 1342 Query 518148 TCATTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 || | || | ||| || || ||||||||||| |||| |||||||||||||| Sbjct 1343 TCTTCTCGCCAACACTGGTGGCCTTCTTGTCAAGACCATAAGCAATAGCAGCAGCAGTTG 1402 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 ||||||| || || | || |||||| ||||||||||| ||| ||||| || ||||| | Sbjct 1403 GTTCATTGATGATCCGCATAACATTCAGACCAGCAATCACTCCAGCATCCTTGGTGGCCT 1462 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | || || || ||||| || || ||||| ||||| | ||| |||| Sbjct 1463 GCCTCTGGGAGTCGTTGAAGTAGGCAGGGACAGTGACAACAGCAT 1507 >seq49510 Length=1741 Score = 123 bits (136), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT----TG 518163 |||||| ||| ||||| || | ||||| || || |||||| | || | || Sbjct 439 ACATCAAAGGTGCCACCTCCAAGGTCAAAGATGAGAACATTCTTCTCACCAACGCTGGTG 380 Query 518164 G--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 | || || ||||||||||| |||| ||||||||||||||| ||||| || || | || | Sbjct 379 GCCTTCTTGTCAAGACCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATCCGCATA 320 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 ||||| ||||||||||| || ||||| || ||||| ||||| || || ||||| || Sbjct 319 ACATTCAGACCAGCAATCACACCAGCATCCTTGGTGGCCTGTCTCTGGGAGTCGTTGAAG 260 Query 518282 TATGCAGGAACAGTAATAACGGCAT 518306 || ||||| || || | ||| |||| Sbjct 259 TAGGCAGGGACGGTGACAACAGCAT 235 >seq2610 Length=5087 Score = 118 bits (130), Expect = 8e-21 Identities = 531/826 (64%), Gaps = 24/826 (3%) Strand=Plus/Minus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||| || ||||| || | ||||||||| |||||||||||||| | || | Sbjct 2902 GTCATCACACCTCCAGCTGTCTCCAGACCAAGAGAGAGAGGAGTGACATCCAACAGAAGC 2843 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 517614 | | || | || || | | |||| ||||| | || || || | |||||| || Sbjct 2842 AGGTCCTGGACCTTCTCGTTGCCCTCACCACTCAAGA-TGGCAGCCTGGACAGCAGCTCC 2784 Query 517615 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 517672 || |||||||| |||||||| || | | || || || | || || ||||| || Sbjct 2783 GTAAGCAACAGCCTCATCAGGGTTGATGCTCTTGCAG--AGCTCCTTGCCGTTGAAGAAG 2726 Query 517673 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 | |||||| || ||||| ||||| | | || || ||||| | |||| || Sbjct 2725 TCCTGAAGAAGCTGCTGCACCTTGGGAATCCTGGTGGAACCACCAACCAGAACAACATCG 2666 Query 517733 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791 ||||| | | | || |||| || | |||| | || || || || || | || Sbjct 2665 TGCACA-GAGCTCTTGTCCATCTTGGCATCCCTCAGGCACTTCTCCACAGGCTCCATACA 2607 Query 517792 CGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 517849 | || |||| || || || || || || | || | || | ||| | || Sbjct 2606 CTTCCTGAACAGATCCATGTTCATC--TCCTCAAACCTGGCACGGGTGATGGTGG-AGTA 2550 Query 517850 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 || ||||| || ||||||| || |||| || || || || || | | || || || Sbjct 2549 GAAGTCAATGCCCTCGAACAGTGAGTCAATCTCGATGGTGGTCTGGGCAGTTGATGACAG 2490 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--A 517966 | | || || | ||||| | |||||| || ||||| | ||| ||| | ||| | Sbjct 2489 AGTCCTCTTCGCCCTCTCACAAGATGTCCTCAGCCTTCGAAGAGCTCTTG--GGTTGCCA 2432 Query 517967 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTA 518026 | | || | || | || |||||||| || | || | | || | | || Sbjct 2431 CTGATGTCCTTCTTGTTCTTCCTCTTGAACTCCTGGACGAAGTGGTTCACCATCCTGTTG 2372 Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || ||||| || | | ||| | || | || || | || | || | || Sbjct 2371 TCAAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCCTTAACCTCAAAGATACCC 2312 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || |||| | | |||| |||||| ||| ||||| || | ||||| || || ||| Sbjct 2311 TCCTCAATGGTGAGGAGAGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGCACA 2252 Query 518147 TTCATTTCTTTGTCT-TGGTTT-----TTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 ||| | || | ||||| || ||||||||||| |||| |||||||| || Sbjct 2251 TTCTTCTCACCAACACTGGTTGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCTGTG 2192 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || || |||| || |||||| | ||||||||| || ||||| || ||||| Sbjct 2191 GGCTCGTTGATGATTCGCAGAACATTGATACCAGCAATGACACCAGCATCCTTGGTGGCC 2132 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || || || || || |||||||| ||||||| ||| |||| Sbjct 2131 TGCCTCTGCGAGTCATTGAAGTATGCAGGGACAGTAACAACAGCAT 2086 >seq1192 Length=6114 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||||||||||||||| ||||| || || ||| ||||| ||| |||||| Sbjct 3655 CCATAAGACAGAGCAGCAGCAGTTGGCTCATTGATGATCCTCTCAACATCAAGCCCAGCA 3714 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| || ||||| || | || | ||| || |||||||| ||||||||| Sbjct 3715 ATACGACCAGCATCCTTGGTGGCCTGCCGCTGAGCATCATTGAAATATGCTGGAACAGTA 3774 Query 518297 ATAACGGC 518304 || || || Sbjct 3775 ATCACAGC 3782 >seq3253 Length=4817 Score = 98.7 bits (108), Expect = 7e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || ||||||||| | | || ||||||||| ||||| | ||| || || | | |||| Sbjct 1817 TTCTTGTCAAGACCACAAGAAATAGCAGCAGCGGTTGGCTAATTGATGATGCGTATAACA 1758 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| ||| |||| || || || || || | ||||||||||| ||| Sbjct 1757 TTCAGACCAGCAATCACTCCAACATCCTTGGTTGCCTGCCTCGGGGAATCGTTAAAGTAT 1698 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 | ||| ||||| | ||| |||| Sbjct 1697 GTAGGGACAGTGACAACAGCAT 1676 >seq4181 Length=4513 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 668858 AAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGTACA 668917 ||||||||||| |||||||||||||||||||| || ||||| ||| | || || ||||| Sbjct 2556 AAAGAAGGTCGGATTAGAGGAAATTTGATGGGGAAGCGTGTTGATTTCTCAGCTCGTACG 2615 Query 668918 GTTATTACTTCTGATCCCAATAT 668940 || || || | ||||||||||| Sbjct 2616 GTCATCACACCAGATCCCAATAT 2638 >seq1011 Length=6351 Score = 86.0 bits (94), Expect = 5e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||||| || |||||||||||||||||| || || || || |||| ||| |||||| Sbjct 2301 CCATACGAAAGAGCAGCAGCAGTTGGTTCGTTGATGATCCTTTGGACATCAAGTCCAGCA 2242 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 |||| || ||||| || || || || | || | ||| || || || || ||||| || Sbjct 2241 ATTCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTGAAGTAAGCTGGAACTGTG 2182 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGC 518331 || || || | | || ||| |||| |||||| Sbjct 2181 ATCACAGCCTTGGAAACAGATTTGCCAAGATAAGC 2147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3747764354003080