Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq12173 145 9e-30 seq88849 141 1e-28 seq7224 118 1e-21 seq353702 109 7e-19 seq625560 102 1e-16 >seq12173 Length=3197 Score = 145 bits (160), Expect = 9e-30 Identities = 121/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||||||| |||| || || || || ||||| || |||||||| || ||||| Sbjct 1045 CTTCGCCGAGCGACTCGTCGCCTTCGCATGCGTCGAGGGCATATTCTTCTCGGGCTCCTT 1104 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| ||||||||||| Sbjct 1105 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGT 1164 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| ||||||||||| | |||| Sbjct 1165 GCTCATCTCGCGTGACGAGGGCCGCCAC 1192 >seq88849 Length=1251 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || | || || || || || ||||| ||||||||||| || ||||| Sbjct 492 CTTCGCGGAGCGCATCGTGGCGTTCGCATGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 433 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 432 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGA 373 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| |||||| Sbjct 372 GCTCATCTCACGCGACGAGGGGCTCCAC 345 >seq7224 Length=3831 Score = 118 bits (130), Expect = 1e-21 Identities = 152/205 (74%), Gaps = 16/205 (8%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 ||||| ||||||||||| ||||| ||||| || | ||| || |||| |||||||||| | Sbjct 2550 TCAAAGCCATCCATCTCAGTCAACAGCTGATTGAGAGTCTGCTCCCTTTCATCATTCCC- 2608 Query 16032 GGCATACCACCAGCA-CTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 16085 ||||||| | ||| | ||| |||| ||||||||||| ||||||| || Sbjct 2609 -----ACCACCAATACCTGTTCCTCTCTGCCTTCCAACGGCATCAATTTCATCAACAAAC 2663 Query 16086 ACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGC 16143 |||||||| || ||| || | | | |||| |||||||| || ||||| ||| | Sbjct 2664 ACGATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGAAGAGATCACGGACACGGGAGGCAC 2721 Query 16144 CCACACCAACAAACATCTCCACAAA 16168 | |||||||||||||||||||| || Sbjct 2722 CAACACCAACAAACATCTCCACGAA 2746 >seq353702 Length=449 Score = 109 bits (120), Expect = 7e-19 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 102216 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 102275 |||||||| || ||||||||||| || | |||||||||||||| || |||||||| || Sbjct 1 TTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGC 60 Query 102276 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||||||||||||| ||||| || ||||| || || ||| Sbjct 61 CTCACCTTCTCCAACGAGCTCATCTCACGCGACGAAGGGCTGCAC 105 >seq625560 Length=224 Score = 102 bits (112), Expect = 1e-16 Identities = 98/124 (79%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| || | ||||||||| || || || |||| ||||||||| | || Sbjct 221 AAGCCATCCATCTCCGTGAGAAGCTGGTTGATGGTCTGCTCCCTCTCATCATTCCC--GC 164 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 ||| ||||||| || ||| | || ||||| ||||||||||||||||||||||||| Sbjct 163 CGCCCATCCCAGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCAATGAAGACGATGC 104 Query 16093 ATGG 16096 | || Sbjct 103 AGGG 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615573322849600