Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq47147 113 5e-20 seq625560 102 1e-16 seq88849 96.9 4e-15 >seq47147 Length=1785 Score = 113 bits (124), Expect = 5e-20 Identities = 316/474 (67%), Gaps = 16/474 (3%) Strand=Plus/Minus Query 11512 CGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCAATGACT 11571 || || |||||||| || || | || || || || ||||| || ||||| || || Sbjct 1784 CGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGGCGGTTCGTGGCGGCGATCACG 1725 Query 11572 ACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGT 11631 | | ||| | ||| ||| |||||||| || ||||| |||||||||| |||||| Sbjct 1724 ATGACGCCGCTGTCACCACTGAAGCCGTCCATCTCGGTGAGCAGCTGGTTGAGCGTCTGC 1665 Query 11632 TCACGCTCATCGTTGGAGG-GC--ATACCACCTGCCGAACGCTTCTTACCGACAGCGTCA 11688 || | ||| |||||| | || || || | ||||| |||| | ||||| ||||| Sbjct 1664 TCCCTCTCGTCGTTGCCGCCGCCGATGCC-CGTGCCG--CGCTGCCGGCCGACGGCGTCG 1608 Query 11689 ATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGT 11748 ||||| |||||||| |||| ||||| |||| | |||| | || || || || Sbjct 1607 ATCTCGTCGATGAACACGAGGCACGGCGCGTTGTCCTTGGCCTTGTTAAACAGGTCCCGC 1548 Query 11749 ACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAA 11806 || ||| ||| || || || ||||||||||| | ||| | | | | ||| | ||| Sbjct 1547 ACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCCGACCCGGAGAGC-GAGAA 1489 Query 11807 TGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAG 11866 |||||| || | ||| || ||||| || || || || ||||| || || || | Sbjct 1488 -GAAGGGCACGCCGGCCTCCCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCGGTCCCCG 1430 Query 11867 GTGCACCAGCGAGAAGGGCGCCACGGGGGAT-CTTGGCACCACTTCC--AAAGTAGCGCT 11923 | | || | || || |||| |||||| || | | ||||| || || | | | Sbjct 1429 GAGGGCCGACCAGCAGCACGCCCTTGGGGATCCTCGCCCCCACTGCCGTGAACTTG---T 1373 Query 11924 CAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGA 11977 | || ||||||||| | ||| ||||||| | |||| ||| || ||||| Sbjct 1372 CCGGGAACTTGAGGAACTGCACGATCTCCTGGAAGTCCTGCTTCGCCTCGTCGA 1319 >seq625560 Length=224 Score = 102 bits (112), Expect = 1e-16 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTT---GGA 11648 ||| || ||||| || ||||||||||||||||| ||||| || | |||||| || | Sbjct 222 GAAGCCATCCATCTCCGTGAGAAGCTGGTTGATGGTCTGCTCCCTCTCATCATTCCCGCC 163 Query 11649 GGGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGAT 11708 | ||| ||| | | ||||| | | ||||| |||||||||||||| ||||| ||||| Sbjct 162 GCCCATCCCAGCACC---ACGCTGCCTCCCGACGGCGTCAATCTCATCAATGAAGACGAT 106 Query 11709 ACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACC 11768 || || ||||| |||| ||||| || || | || | ||| |||||||| Sbjct 105 GCAGGGCGCCTTGGCCTTGGCCTTCTCGAACAGATCCCTCACCCTGGACGCACCAACACC 46 Query 11769 TACGAACATCTCAACGAA 11786 ||||| | ||| ||||| Sbjct 45 GACGAAGAGCTCGACGAA 28 >seq88849 Length=1251 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || ||||| || || || ||||||||||| || |||| || || |||||||| || Sbjct 346 TGGAGCCCCTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCCCC 405 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || || Sbjct 406 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAT 465 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| || | | ||||| || || | ||| | ||||| ||| ||| ||||| Sbjct 466 GCGAACGCCACGATGCGCTCCGCGAAGCGCTCGCCGC-CGTCGATCCAGCGGAGCGCCCA 524 Query 119687 GTTGGCCTTACG 119698 || |||||| || Sbjct 525 GTCGGCCTTGCG 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584071449604000