Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq88849 118 1e-21 seq12173 113 5e-20 seq7224 102 1e-16 seq625560 89.7 6e-13 seq178609 84.2 3e-11 >seq88849 Length=1251 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || || || || || || || |||||| ||||| |||||||| || Sbjct 345 GTGGAGCCCCTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCCC 404 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 405 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 464 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || ||||| | | |||||| |||||| Sbjct 465 TGCGAACGCCACGATGCGCTCCGCGAAG 492 >seq12173 Length=3197 Score = 113 bits (124), Expect = 5e-20 Identities = 304/456 (67%), Gaps = 18/456 (4%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || ||||||||||||||||||||||| || | ||| ||| ||||| Sbjct 1491 TAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1432 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTG-GCACCCCAACTTGTTTGAGGAGACG 117104 |||| || || || ||||| | || | ||| || | | | ||| || || Sbjct 1431 CAGTCGAACGGGTTGGCGGCGTTGTACATCTTGGCGCAGCCGAGCGCCAT-GAGCAGGCG 1373 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | || |||||||||||| | ||| | | |||||| |||| ||| || Sbjct 1372 GTCTGCGACGAACTCAATGTACTGGCCCATGAGGCCGGCGTTCATGCCGACGAGGGCGCA 1313 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| ||||| |||||||| | |||| || || || || || ||||| || | Sbjct 1312 GGGGAGCGCGTCGCAGATGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCG 1253 Query 117225 GATAGTTTCGGTAGTGGGTCTA--TTAC----GCAAAGTC--TTGAAGAGCTCCACGGCA 117276 || ||| | | | || | || | | || | | || ||| || ||| Sbjct 1252 GACG----CGGGACTCG-TCAAGCTTGCTGTTGAGGAGGCCGTAGAGGAGG--CA-GGCG 1201 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || |||| | ||||| || || || || || | || |||||| ||||| ||| Sbjct 1200 AAGTCGCAGTGGCGGCCCTCGTCACGCGAGATGAGCACGTTGGAGAAGGTGAGGCCGGGC 1141 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 ||||| ||||||||||| | ||| | || |||||||| || || |||||||| || ||| Sbjct 1140 ATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAATATGCCC 1081 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || || || || | || |||||||||||| Sbjct 1080 TCGACGCATGCGAAGGCGACGAGTCGCTCGGCGAAG 1045 >seq7224 Length=3831 Score = 102 bits (112), Expect = 1e-16 Identities = 145/203 (71%), Gaps = 12/203 (6%) Strand=Plus/Plus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 ||||| ||||||||||| ||||| || || || | ||| || |||| |||||||||| | Sbjct 2550 TCAAAGCCATCCATCTCAGTCAACAGCTGATTGAGAGTCTGCTCCCTTTCATCATTCCC- 2608 Query 9339 GGCATACCACCAGCAC---TGCGT---TGCTTTCCCACGGCATCAATCTCATCAATGAAG 9392 ||||||| || | | | ||| |||| ||||||||||| ||||||| || Sbjct 2609 -----ACCACCAATACCTGTTCCTCTCTGCCTTCCAACGGCATCAATTTCATCAACAAAC 2663 Query 9393 ACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCC 9452 || || || || ||| || ||| | | |||||||| || || | ||| || Sbjct 2664 ACGATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAGAGATCACGGACACGGGAGGCACCA 2723 Query 9453 ACACCAACAAACATCTCCACAAA 9475 |||||||||||||||||||| || Sbjct 2724 ACACCAACAAACATCTCCACGAA 2746 >seq625560 Length=224 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||| || | ||| ||||| || || || |||| ||||||||| | || Sbjct 221 AAGCCATCCATCTCCGTGAGAAGCTGGTTGATGGTCTGCTCCCTCTCATCATTCCC--GC 164 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 ||| ||||||| || ||| | || ||||| |||||||||||||||||||| || | Sbjct 163 CGCCCATCCCAGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCAATGAAGACGATGC 104 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || || | ||| | || || ||||| | ||||| || || ||||| | Sbjct 103 AGGGCGCCTTGGCCTTGGCCTTCTCGAACAGATCCCTCACCCTGGACGCACCAACACCGA 44 Query 9460 CAAACATCTCCACAAAGTTTGCGGCgg 9486 | || | ||| || || | || |||| Sbjct 43 CGAAGAGCTCGACGAACTCTGACGCGG 17 >seq178609 Length=759 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 ||| || || |||||||| | |||||||||||| || || | ||||||||| | Sbjct 517 TGGTAGAGCAATTGATGCAAGATTGCAAACAGCAGTTTCGGTGGGACTTGTGTACTCAAT 458 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575 || || ||||||||||||||| |||||| || |||| ||||| || ||||| || | Sbjct 457 TATCTCCGTACACAAGTTGGAAGACTTAATTGTGCCCAGATTCTGCTGATTACTTTTCCT 398 Query 106576 GTTGCACGCATCCT 106589 ||||| | |||| Sbjct 397 ATTGCAAGAGTCCT 384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585067882383200