Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq351396 298 7e-76 seq162061 215 6e-51 seq664408 141 1e-28 seq217498 134 2e-26 seq597246 132 6e-26 seq623740 116 4e-21 seq41969 113 5e-20 seq466979 109 7e-19 seq632425 91.5 2e-13 seq458695 91.5 2e-13 seq171123 89.7 6e-13 seq63256 89.7 6e-13 seq71309 86.0 8e-12 seq472319 84.2 3e-11 >seq351396 Length=451 Score = 298 bits (330), Expect = 7e-76 Identities = 282/360 (78%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 180375 GAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACC 180434 ||||| ||||||| ||| || || | |||||||| ||||||||||| |||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 180435 TACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTC 180494 || || || || ||||| ||||| || || || || | |||||||| ||||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 180495 AACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTC 180554 |||||||| ||||| | ||||||||| |||| || |||||||| || || ||||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 180555 ACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 180614 ||||| | || | || || ||||| |||||||| || |||||||| |||||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 180615 ATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGT 180674 | ||||| |||||||||| || | || |||||||| || | ||||||| ||| | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 180675 CTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCT 180734 || ||||||||||| |||||||| |||||||||||||||||||| || ||||| || ||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 215 bits (238), Expect = 6e-51 Identities = 258/348 (74%), Gaps = 2/348 (1%) Strand=Plus/Plus Query 181727 CTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCT 181785 |||||||| || || || || || ||||| ||| | | ||||||||||||||||| ||| Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 181786 AATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTC 181845 || | | || || || ||||| || | || || ||||| || || || || || || Sbjct 276 GTTCA-ATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 181846 TGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGT 181905 |||||| || || ||||| ||||| ||||| |||||||||||||||||||||| || || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 181906 CGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCC 181965 || || || || || ||| | || ||| |||| || ||||||||||||||| | || || Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 181966 CTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGG 182025 || ||||||||||| ||||| || | | || | || | || | || ||||| || Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 182026 TGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATAC 182073 | |||||| || || ||||| | | | |||||||| |||||||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATAC 562 >seq664408 Length=200 Score = 141 bits (156), Expect = 1e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 180132 GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGT 180191 || ||||| || ||||| || || || || ||||||| ||| | | || ||| | ||| Sbjct 192 GTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGT 133 Query 180192 CAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTT 180251 ||||| |||||||| | ||||| | || || ||||| | ||||||| ||| || Sbjct 132 CAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGATT 73 Query 180252 GTTTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGT 180311 || ||||| ||||||||||||||||| ||||| || ||||||||| | || ||||| ||| Sbjct 72 GTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGGT 13 Query 180312 GTCTTCGGCGG 180322 || |||||||| Sbjct 12 GTATTCGGCGG 2 >seq217498 Length=656 Score = 134 bits (148), Expect = 2e-26 Identities = 164/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | ||||||| | ||| |||| || | ||||| || || |||| ||||| Sbjct 311 GTGGGGTCGCTTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTT 370 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCA 179856 ||| ||| ||||||| || ||| | ||| | |||||| |||| || || ||||||||| Sbjct 371 CGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCA 429 Query 179857 TCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGT 179916 ||||||| || || || || || ||||| || ||||| || || ||||||| | | | Sbjct 430 TCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTT 489 Query 179917 ATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCC 179957 |||| ||||| || |||||||||| || ||||| ||||| Sbjct 490 ATGGAAACAATATTCTCTCTGGTGCTATTATTCCTACTTCC 530 >seq597246 Length=243 Score = 132 bits (146), Expect = 6e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 179916 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCAC 179975 ||||| ||||| || ||||||||||| || ||||| |||| || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 179976 TTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTC 180035 || || || || |||||||| ||||| |||| |||||| | || || |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 180036 CAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAA 180095 | || | || | |||||| | |||| | | || |||||||||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 180096 CTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCT 180146 ||| || || ||||||||||| || ||||| ||| || ||||| || ||| Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTGTTGCATACTCAGCT 1 >seq623740 Length=225 Score = 116 bits (128), Expect = 4e-21 Identities = 117/152 (77%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 181838 TTCGTCTCTGTATTTCTCATCTATCCTCTGGGA-----CAATCCAGTTGGTTCTTTGCGC 181892 || || |||||||| || || ||||| ||||| | || | ||||||||||||||| Sbjct 152 TTTGTTTCTGTATTCCTTATTTATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGC 93 Query 181893 CGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATT 181952 ||||||| || || || || || || || ||| | || ||| |||| || |||||||||| Sbjct 92 CGAGTTTTGGCGTAGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATT 33 Query 181953 GGACGCTCAATCCCTTCCATATGATGGGTGTT 181984 ||||| | || || || ||||||||||| ||| Sbjct 32 GGACGTTGAACCCATTTCATATGATGGGAGTT 1 >seq41969 Length=1890 Score = 113 bits (124), Expect = 5e-20 Identities = 142/194 (73%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 182243 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAA 182302 || || ||||| ||| | ||||| ||||| ||||| ||||| ||| || | ||| | ||| Sbjct 552 GGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGAA-TCCGTGCAGCGGAA 494 Query 182303 GACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCA 182362 || | || || ||||| |||||||| || || ||||| || || || ||| | ||||| Sbjct 493 GATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCG 434 Query 182363 TGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCC 182422 ||| | ||| | ||||| || ||||| || || | ||||||||||| || |||| Sbjct 433 TGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCA 374 Query 182423 AGAGGTAACGCACT 182436 | || ||||| || Sbjct 373 CGTGGAAACGCTCT 360 >seq466979 Length=342 Score = 109 bits (120), Expect = 7e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 182091 CAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCT 182150 ||||||||| |||||||| ||||||||||| || || ||| |||| ||||| || |||| Sbjct 227 CAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCT 168 Query 182151 TCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTT 182200 | ||| |||| ||| |||||| | ||||| |||||||||||||| ||| Sbjct 167 TTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq632425 Length=219 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| || |||||||||||||| ||| Sbjct 127 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGACTGGTCGTAGGTTCGAAT 186 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 187 CCTACTTGGGGAG 199 >seq458695 Length=349 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 141678 GGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCT 141737 ||||||||| ||||||||||| || || ||||||||||||| ||| | ||| ||| Sbjct 238 GGAAGAGTGTCCGAGTGGTTTAAGGAACCGGTCTTGAAAACCGGCGTGCGTGAAAGCGTA 297 Query 141738 CCGTGGGTTCAAATCCCACCTCTTCCGTTATAATTTCCTC 141777 |||||||| | |||||||||||||||| ||| | |||| Sbjct 298 CCGTGGGTGCGAATCCCACCTCTTCCGCCATATTCGCCTC 337 >seq171123 Length=784 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 180584 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATG--GTCAAGGTCGTGTGCTC 180641 |||||| || |||||| | || ||||| || | ||||| ||||||| || || | Sbjct 642 CAACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATACAGTCAAGGCCGCGTTATT 701 Query 180642 AACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 180701 || ||||| | || | ||||||| ||| | | ||||||||||| |||||| | || Sbjct 702 AATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGA 761 Query 180702 AATGCTCACAACTTCCCACTTGA 180724 ||||||||||||||||| || || Sbjct 762 AATGCTCACAACTTCCCTCTAGA 784 >seq63256 Length=1526 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 181652 CTACTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTC 181711 ||||| ||||| || ||||| || || ||||| |||||| || | || || | Sbjct 21 CTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTTTA 80 Query 181712 TGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTT 181771 ||| | ||||| || |||||||| || || || || || ||||| ||| | | |||||| Sbjct 81 TGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTT 140 Query 181772 GAACTTGCTC-GTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTAT 181830 |||||||||| |||| || | | || || || ||||| || | || || | ||| || Sbjct 141 GAACTTGCTCGGTCTGTTC-AATTGCGGCCTTATAATGCAATCTCATTCTCTGATCCAAT 199 Query 181831 TGCTGTATTCGTCTCTG-TATTT 181852 || || || || |||| ||||| Sbjct 200 CGCGGTTTTTGTTTCTGATATTT 222 >seq71309 Length=1427 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/156 (72%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 180375 GAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACC 180434 ||||| | ||||| ||| || || | | |||||| ||||||||||| |||||||| Sbjct 649 GAAACAATTGAAAATGAATCT---AATGAGGTTTACAATTTTGGTCAAGAGGAAGAGACT 705 Query 180435 TACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTC 180494 || || || || || ||||| || || || | |||||||| ||||||| ||| Sbjct 706 TATAATATTGTGTTTGTGCATGGTTATTTTTTCCGATTAATCTTCCAATATGCATGTTTC 765 Query 180495 AACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCA 180530 |||||||| ||||| | ||||| ||| || | ||| Sbjct 766 AACAACTCACGTTCTTTCCACTTTTTCTTGTCTGCA 801 >seq472319 Length=337 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 180410 CAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGGTCG 180469 ||| ||||||||||| ||||||| || || || || ||||| ||||| || || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 180470 TCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTT 180520 | |||||||| ||||| ||||||||||| ||||| | |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605313873247200