Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq351396 192 7e-44 seq664408 152 6e-32 seq597246 152 6e-32 seq162061 118 1e-21 seq41969 107 2e-18 >seq351396 Length=451 Score = 192 bits (212), Expect = 7e-44 Identities = 238/326 (73%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 170059 GGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTT 170118 ||||| || || || ||||| ||||| || || || || || || || || ||||| ||| Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 170119 GGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTA 170178 || || | |||||||| |||||| ||||||||||| | | ||||||||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 170179 GCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 170238 || | || ||||| ||| | | ||||| || || | ||||| | || ||||| ||| Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 170239 AACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCA 170298 ||| | ||||||||||| || |||||||| || |||||| | | || | | Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 170299 ACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAAT 170358 || |||| |||| | | ||| |||| || | ||||||||||| ||||| ||| | ||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 170359 GCACACAACTTCCCACTAGACCTAGC 170384 || ||||||||||| ||||||||||| Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGC 93 >seq664408 Length=200 Score = 152 bits (168), Expect = 6e-32 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 169785 TGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGG 169844 |||||||||||| || || || | ||||| ||||| ||||| | ||||| |||| Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 169845 TCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTT 169904 ||| || ||||||||||||||||| |||| || || |||| ||||||||||||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 169905 CGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGG 169964 || ||||| |||||||| ||||| || |||||||| ||||||||| ||| ||||| || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 169965 AATGTTCGGAGG 169976 | ||||| || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 152 bits (168), Expect = 6e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 169558 GGTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCT 169617 |||||||| | ||||| ||||| || ||||||||||| || |||| | || || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 169618 ATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAAT 169677 |||||| | ||||| |||||||| |||||||| ||| |||||||||| ||||| || ||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 169678 GGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGA 169737 |||||||||||| || | | | | |||||| | ||||| | | || ||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 169738 AGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCT 169797 | |||||||||| | | | || || |||||||||||||| |||||||||||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 169798 GC 169799 || Sbjct 3 GC 2 >seq162061 Length=815 Score = 118 bits (130), Expect = 1e-21 Identities = 214/312 (69%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 170844 TTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATCAGA 170903 |||| ||| |||||||||||| | | |||||||| | || | ||| | | Sbjct 228 TTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGG 287 Query 170904 CCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCTGATC 170963 ||||| || ||| || ||||||||| | ||||| || || | | || || || Sbjct 288 CCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCTGTATTCCTTATT 347 Query 170964 TATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAATTTTT 171023 |||||||| || || |||||||||| || || || || || |||||||| ||| Sbjct 348 TATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAATATTT 407 Query 171024 CGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATG 171083 || | ||| | ||| | ||||| || || || || ||||| |||||||| |||||| Sbjct 408 CGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATG 467 Query 171084 GGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAG 171143 || ||||| ||| || |||| | || | |||| || |||||||| || || || || Sbjct 468 GGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCGACCGT--AG 525 Query 171144 AACACATTGTAT 171155 || ||| | ||| Sbjct 526 AAAACACTCTAT 537 >seq41969 Length=1890 Score = 107 bits (118), Expect = 2e-18 Identities = 154/214 (72%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 171355 CTATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGA 171414 |||| || | ||||| || || || ||| | | || || |||||||| || || || | Sbjct 566 CTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-A 508 Query 171415 TAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATG 171474 | | ||||| ||||| | || || |||||||||||||| || ||||| ||| | || | Sbjct 507 TCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 448 Query 171475 AAGGTATGAGAGCATGGATGTCA--TCAGTTGACCAACCACATGAGAACTTCGTATTCCC 171532 | ||||| | || |||||| || |||| || || || ||||| || | ||||||| Sbjct 447 AGGGTATTCGTGCGTGGATGGCAGCTCAG--GATCAGCCTCATGAAAATCTTATATTCCC 390 Query 171533 AGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 || || || ||||| | || ||||| |||||| Sbjct 389 TGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574389550211200