Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq351396 259 5e-64 seq162061 188 8e-43 seq597246 140 4e-28 seq41969 138 1e-27 seq664408 132 5e-26 seq63256 129 7e-25 seq466979 93.3 5e-14 seq623740 89.7 6e-13 seq178439 89.7 6e-13 seq472319 84.2 2e-11 >seq351396 Length=451 Score = 259 bits (286), Expect = 5e-64 Identities = 275/363 (76%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 168487 AGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAA 168546 || || || ||||||| ||||| || | |||||||| || || ||||| ||||| Sbjct 451 AGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAG 392 Query 168547 ACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 168606 || || || || || || ||||||||||| || || || || ||||||||||| ||| Sbjct 391 ACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 332 Query 168607 TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 168666 ||||||||||| || || || ||||||||| | ||||| |||||||| || || |||||| Sbjct 331 TTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGG 272 Query 168667 TTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 168726 ||||| || | || | || ||||| |||||||| || |||||||| |||||||| Sbjct 271 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 212 Query 168727 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCT 168786 || | ||||| |||| ||||| || | || || ||||| ||| | | ||||| ||| Sbjct 211 TCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCT 152 Query 168787 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCT 168846 ||| ||||||||||| ||||| || ||||| || ||||||||||| || || || ||| Sbjct 151 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 92 Query 168847 GCT 168849 ||| Sbjct 91 GCT 89 >seq162061 Length=815 Score = 188 bits (208), Expect = 8e-43 Identities = 250/347 (72%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 169610 CTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTT 169669 || || || || |||||| | || ||||||||| | | || |||||| | || || | Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 169670 ATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGT 169729 || | || ||||||||||| || ||||||||||||| || || || ||||| | Sbjct 276 GTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCT 335 Query 169730 GTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTA 169789 || || ||||| || ||||| || || || ||||||||||| || ||||| ||| Sbjct 336 GTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTA 395 Query 169790 TCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCA 169849 ||||||| || | ||| | | ||| | |||||||| || || ||||||||||| ||| Sbjct 396 GCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 455 Query 169850 TTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGT 169909 || || |||||||| || || ||| | || |||| || |||| | ||||| ||||| Sbjct 456 TTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGA 515 Query 169910 GTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATAC 169956 | || ||||| ||||| | | ||| |||||||| |||||||| Sbjct 516 GCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATAC 562 >seq597246 Length=243 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 168031 TATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCAC 168090 ||||| ||||| || ||||||||||| || | ||| |||| || || ||| | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 168091 TTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTC 168150 || || || || |||||||| ||||| | ||||||||||| || || |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 168151 CAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAA 168210 | ||| | || | |||||| | | ||| | | || ||||| ||||| |||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 168211 CTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGC 168260 ||| | ||||| ||||||||||| ||||| |||||||||||| || Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGC 2 >seq41969 Length=1890 Score = 138 bits (152), Expect = 1e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 170112 CTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGA 170171 |||||||| | | ||||| ||||| || | ||||| || ||||| || ||||| | Sbjct 566 CTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-A 508 Query 170172 TCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATG 170231 || | ||||| ||||||| ||||||||||| |||||||||||||| || || || || | Sbjct 507 TCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 448 Query 170232 AAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAG 170291 | || ||||||| ||| ||||| || ||||| || |||||||| | || ||||| | Sbjct 447 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 388 Query 170292 AAGAAGTTCTTCCGAGAGGTAACGCACT 170319 | || ||||| || | || ||||| || Sbjct 387 AGGAGGTTCTACCACGTGGAAACGCTCT 360 >seq664408 Length=200 Score = 132 bits (146), Expect = 5e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 168246 TGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGG 168305 |||||||||||| || || || || || || | ||| || ||| | | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 168306 TCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTT 168365 |||||| || |||||||||| ||||| | ||||| || || | ||||||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 168366 GGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGG 168425 || ||||| || |||||||| || || |||||||| ||||| ||| | || || ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 168426 GGTATTTGGTGGC 168438 ||||| || ||| Sbjct 13 TGTATTCGGCGGC 1 >seq63256 Length=1526 Score = 129 bits (142), Expect = 7e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 169522 ACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCA 169581 |||||| || | | |||||||| || ||||||||||| ||||| |||||||||||| Sbjct 8 ACACTCTTTGTTGCTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCA 67 Query 169582 ATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCAT 169641 || || ||| | |||| |||||||| || || || || |||||| | || |||||||| Sbjct 68 GTTAGGCGGTTTATGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCAT 127 Query 169642 GCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATT 169701 | | | || |||||| | || || | || | || ||||||||||| || |||| Sbjct 128 GTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAATGCAATCTCATT 187 Query 169702 CTCTGGTCCTATTGCTGTATTTGT 169725 ||||| ||| || || || ||||| Sbjct 188 CTCTGATCCAATCGCGGTTTTTGT 211 >seq466979 Length=342 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 169985 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 170044 ||||| |||||||| ||||||||||| ||| |||| ||||| || ||||| ||| |||| Sbjct 216 GAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTTGGTGTTGCT 157 Query 170045 TTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTT 170083 ||||| || || |||||| | ||||| || ||| | ||| Sbjct 156 TTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq623740 Length=225 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/190 (72%), Gaps = 8/190 (4%) Strand=Plus/Minus Query 169684 TTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT--GTCAGTGTCTTTCTTATC 169741 ||||||||| || |||||||| ||| || || || ||| || ||| || ||||| Sbjct 190 TTATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATT 132 Query 169742 TACCCACTTGGACAGTCC---TCA--TGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAA 169796 || ||||| || | | || ||||||||||| || ||||| ||| |||||| Sbjct 131 TATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAA 72 Query 169797 TCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACA 169856 | || | ||| | | ||| | |||||||| || || ||||||||||| ||||| || | Sbjct 71 TATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATA 12 Query 169857 TGATGGGTGT 169866 ||||||| || Sbjct 11 TGATGGGAGT 2 >seq178439 Length=759 Score = 89.7 bits (98), Expect = 6e-13 Identities = 101/136 (74%), Gaps = 6/136 (4%) Strand=Plus/Plus Query 170166 AGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTAT 170225 |||| ||| | ||| | ||||||| ||||||||||| |||||||||||||| || || | Sbjct 629 AGGAAATCCGTGCAACGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTT 688 Query 170226 TGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCT 170285 | ||||| || |||||| ||| ||||| || ||| |||||||| | || | Sbjct 689 TAAATGAGGGTATTCGTGGGTGGATGGCAGCTTAGGAT------CATGAAAATCTTATAT 742 Query 170286 TCCCAGAAGAAGTTCT 170301 |||| || || ||||| Sbjct 743 TCCCTGAGGAGGTTCT 758 >seq472319 Length=337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 168525 CAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCG 168584 ||| || || ||||| ||||| | || || || || || ||||||||||| || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 168585 TTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTT 168635 || ||||||||||| ||| ||||||||||| || || || |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569689814714400