Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq351396 293 3e-74 seq162061 210 2e-49 seq597246 149 7e-31 seq664408 134 2e-26 seq217498 127 2e-24 seq63256 102 9e-17 seq466979 100 3e-16 seq472319 96.9 4e-15 seq623740 93.3 5e-14 seq178439 91.5 2e-13 seq71309 84.2 2e-11 seq634786 82.4 8e-11 >seq351396 Length=451 Score = 293 bits (324), Expect = 3e-74 Identities = 281/360 (78%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 164412 GAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACA 164471 ||||| || |||| ||| || || | |||||||| ||||||||||| ||||| || Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 164472 TACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTC 164531 || || ||||| || ||||| ||||| ||||| || | ||||||||||| ||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 164532 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTC 164591 |||||||| ||||| || ||||||||| | ||||| |||||||| || || ||||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 164592 ACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 164651 || || | ||| || || ||||| |||||||| || |||||||| |||||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 164652 ATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGT 164711 | | ||| |||| ||||| || | || |||||||| || | ||||||| ||| | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 164712 CTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCT 164771 || ||||||||||| |||||||| ||||| ||||||||||||||||| || || |||||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 210 bits (232), Expect = 2e-49 Identities = 257/348 (74%), Gaps = 2/348 (1%) Strand=Plus/Plus Query 165497 CTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCT 165555 |||||||||||||| || ||||| ||||||||| | || || |||||| | || || ||| Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 165556 CATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAG 165615 || | | || || || ||||| || | ||||||||||| ||||| ||||||||| Sbjct 276 GTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 165616 CGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGT 165675 || || || || || || ||||| ||||| ||||||| || || || ||| || || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 165676 CGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCC 165735 |||||||| || | ||| | || ||| | |||||||| ||||| ||||| ||||| || Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 165736 CTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGG 165795 |||||||||||||| ||||| || | | || | || |||| | || || ||||| Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 165796 TGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATAC 165843 | || ||||| || ||||| | | | || ||||| | ||||||||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATAC 562 >seq597246 Length=243 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 163953 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCAC 164012 ||||| ||||| || ||||||||||| || |||| | || || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 164013 TTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTC 164072 || ||||| ||||||||||| ||||| ||||||| ||| | ||||| |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 164073 CAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAA 164132 | || | || | |||||| | | ||| | | || |||||||||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 164133 CTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGC 164182 || || |||| | |||||||||||||||||| |||||| ||||| || Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGC 2 >seq664408 Length=200 Score = 134 bits (148), Expect = 2e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 164161 GGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATC 164220 ||||| |||||| ||||| || || ||||| || || | || || ||| || | || | Sbjct 200 GGATTGCTGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACC 141 Query 164221 CTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACT 164280 || | |||||||| |||||||| | ||||| | || || ||||| | ||||||| Sbjct 140 CTATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACT 81 Query 164281 ACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCG 164340 ||| | || ||||| ||||||||||||||||| ||||| || ||||| ||| | || | Sbjct 80 TTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTG 21 Query 164341 TTGCTGGCGTATTTGGCGG 164359 | ||||| ||||| ||||| Sbjct 20 TAGCTGGTGTATTCGGCGG 2 >seq217498 Length=656 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| | ||| | ||| ||| | ||||| || || | || |||||||| ||| || Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 163845 ATGATCCCTACGCTGCTTGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163903 ||||||||||| | | | ||||| ||||| || || |||||||| ||||||| || Sbjct 381 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 439 Query 163904 CCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAA 163963 || || || || |||||||||||||| |||||| | ||||| | | ||||| ||||| Sbjct 440 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 499 Query 163964 CATCATCTCTGGTGCAGTTGTTCC 163987 || |||||||||| || |||| Sbjct 500 TATTCTCTCTGGTGCTATTATTCC 523 >seq63256 Length=1526 Score = 102 bits (112), Expect = 9e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 165420 TGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGAC 165479 |||| || ||||| || || || ||||| ||||| | ||| || | || || Sbjct 19 TGCTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTT 78 Query 165480 TCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGT 165539 | ||| | ||||| || |||||||||||||| || ||||| ||||||||| | || || | Sbjct 79 TATGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAAT 138 Query 165540 TTGAATTAGCAC-GTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCT 165598 ||||| | || | |||| || | | || || || ||||| || | ||||||| ||| Sbjct 139 TTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGATCCA 197 Query 165599 ATCGCTGTTTTTGTT 165613 ||||| ||||||||| Sbjct 198 ATCGCGGTTTTTGTT 212 >seq466979 Length=342 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 165851 GCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGG 165910 || ||| || | ||||||| |||||||| || |||||||| ||||| ||| | || ||| Sbjct 237 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGG 178 Query 165911 TCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTT 165970 || || ||||| ||| |||| ||| ||||| | ||||| |||||||||||||| ||| Sbjct 177 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq472319 Length=337 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 164447 CAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGGTCG 164506 ||| ||||||||||| ||||| | || || ||||| || ||||| ||||| ||||| | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 164507 TCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTT 164557 | ||||||||||| ||| ||||||||||| ||||| || |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq623740 Length=225 Score = 93.3 bits (102), Expect = 5e-14 Identities = 136/190 (72%), Gaps = 8/190 (4%) Strand=Plus/Minus Query 165572 TACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTT--GTTAGCGTCTTTCTCATCT 165629 || ||||| || | |||||| ||| ||||| |||||| ||| || || || || | Sbjct 189 TATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATTT 131 Query 165630 ACCCTCTGGGT-----CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAAT 165684 | || ||||| | || ||||||| || || || ||| || || |||||||| Sbjct 130 ATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAAT 71 Query 165685 CTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATAT 165744 || | ||| | || ||| | |||||||| ||||| ||||| ||||| || |||||||| Sbjct 70 ATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 11 Query 165745 GATGGGTGTT 165754 |||||| ||| Sbjct 10 GATGGGAGTT 1 >seq178439 Length=759 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/152 (73%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 166037 TATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTAC 166096 ||||||||||| ||| | || ||| | ||| | ||||| | || ||||| || |||||| Sbjct 613 TATGACTTTGTTTCCTAGGAAATCCGTGCAACGGAAGATCGTGAATTTGAGACTTTCTAC 672 Query 166097 ACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCG 166156 || ||||| ||||| || ||||| ||| |||||| ||| ||||| | ||| Sbjct 673 ACCAAAAATATTCTTTTAAATGAGGGTATTCGTGGGTGGATGGCAGCTTAGGAT------ 726 Query 166157 CATGAGAACTTTGTCTTCCCTGAAGAAGTTCT 166188 ||||| || || | |||||||| || ||||| Sbjct 727 CATGAAAATCTTATATTCCCTGAGGAGGTTCT 758 >seq71309 Length=1427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 164444 TTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGG 164503 |||||| ||||||||||| ||||| || || || ||||| | || ||||| ||| Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 164504 TCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 164563 || | ||||||||||| || | ||||||||||| ||||| || ||||| ||| | | Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTC 797 Query 164564 TGCA 164567 |||| Sbjct 798 TGCA 801 >seq634786 Length=218 Score = 82.4 bits (90), Expect = 8e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | | || |||||||||||||| || |||||||| || | || ||| Sbjct 143 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 84 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||||||| | ||| | || |||||| |||| ||||| ||||| | || |||| Sbjct 83 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 24 Query 165326 TAT 165328 ||| Sbjct 23 TAT 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552287147959200