Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq351396 237 2e-57 seq664408 152 6e-32 seq597246 125 8e-24 seq217498 114 1e-20 seq472319 93.3 5e-14 seq59528 87.8 2e-12 seq71309 86.0 7e-12 >seq351396 Length=451 Score = 237 bits (262), Expect = 2e-57 Identities = 268/359 (75%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 169115 AGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAA 169174 || || |||||||| | |||||| || | |||||||| || |||||||| ||||| Sbjct 451 AGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAG 392 Query 169175 ACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGT 169234 || ||||||||||| || || ||||| || || || ||||||||||||| ||||| ||| Sbjct 391 ACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 332 Query 169235 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGG 169294 ||||||||||| | | | ||||||||| | || | | || || ||| | | ||| Sbjct 331 TTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGG 272 Query 169295 TTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAA 169354 || || || | ||||| |||| ||||| |||||| | || || || || || |||||| Sbjct 271 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 212 Query 169355 TCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCA 169414 || || || ||| | | ||| | ||| ||| |||| ||| | | ||| |||| Sbjct 211 TCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCT 152 Query 169415 AACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473 || |||||||||||||||||||| || ||||| |||||||||||||| |||||| |||| Sbjct 151 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 93 >seq664408 Length=200 Score = 152 bits (168), Expect = 6e-32 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 168874 TGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGG 168933 |||||| || ||||| || || | || || ||| || ||| | | ||||| |||| Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 168934 TCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTT 168993 ||| || |||||||||||||||||| ||||||| ||||| | |||||||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 168994 CGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGG 169053 |||||||| |||||||||||||| ||||||||||| ||||| ||| ||| ||||| || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 169054 TATGTTCGGTGG 169065 | | ||||| || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 125 bits (138), Expect = 8e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 168647 GGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCA 168706 ||| || || | ||||||||||| || ||||| ||||| || |||| |||| || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 168707 ATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAAT 168766 ||||| | ||||| ||||||||||||||||| || | | |||||||||||||| ||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 168767 GGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGT 168826 ||||||||||| || | | | | |||||| || | || | || || |||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 168827 AGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCA 168886 | |||||||| | | | | | |||||| | |||||||| |||||| || ||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 168887 GC 168888 || Sbjct 3 GC 2 >seq217498 Length=656 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| |||||| | ||| | ||||| | || ||||||||||| || Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| |||||| || ||| | | ||| || ||| | || || || ||||| || Sbjct 381 ATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCC 439 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | || ||||| | ||| || || | ||||||||||| Sbjct 440 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 499 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTC 168699 || |||| ||||| || |||| |||| Sbjct 500 TATTCTCTCTGGTGCTATTATTCCTACTTC 529 >seq472319 Length=337 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 169153 CAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAG 169212 ||| || |||||||| ||||| | ||||||||||| || || ||||| || || || Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 169213 ATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTT 169263 |||||||||||| ||||| |||||||||||||| | | | |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq59528 Length=1577 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 169049 GCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCT 169108 || ||| | ||||| || || ||||| || ||||||||||| | ||||| ||| | Sbjct 418 GCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 477 Query 169109 CTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAA 169168 | ||||| || | || ||| | |||||| || | |||||||| || |||||||| Sbjct 478 TTGATCAGGGAAATTATTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAG 537 Query 169169 GAAGAAACCTATAATATTGTTGC 169191 ||||| || ||||||||||| || Sbjct 538 GAAGAGACTTATAATATTGTGGC 560 >seq71309 Length=1427 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 |||||| || |||||||| ||||| || ||||||||||| | ||||| || || Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTC 169264 ||||||||||||| |||||| |||||||||||||| | | | ||||| ||| Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTC 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559741353686400