Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq351396 208 9e-49 seq664408 131 2e-25 seq162061 118 1e-21 seq597246 116 4e-21 seq41969 107 2e-18 seq217498 82.4 9e-11 >seq351396 Length=451 Score = 208 bits (230), Expect = 9e-49 Identities = 264/363 (73%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 172444 AGAGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAA 172503 || || || |||||| ||||| || | || ||||| || || ||||| ||||| Sbjct 451 AGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAG 392 Query 172504 ACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 172563 || || || || || || || || ||||| ||||| || | |||||||| |||||| | Sbjct 391 ACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 332 Query 172564 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGG 172623 ||||||||||| | | | ||||||||| | || | || ||||| ||| | | ||| Sbjct 331 TTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGG 272 Query 172624 TTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAA 172683 || || || | ||||| |||| ||||| |||||||| || |||||||| ||||||||| Sbjct 271 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 212 Query 172684 TCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCA 172743 || || || ||| | | ||| || || ||| |||| ||| | | ||| |||| Sbjct 211 TCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCT 152 Query 172744 AACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCT 172803 || || ||||||||||| ||||| ||| | ||||| ||||||||||| ||||||| ||| Sbjct 151 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 92 Query 172804 TCT 172806 || Sbjct 91 GCT 89 >seq664408 Length=200 Score = 131 bits (144), Expect = 2e-25 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 172203 TGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGG 172262 ||| ||||| ||||| ||||| | || || |||||| ||| | | || || | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 172263 TCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTT 172322 ||| || ||||||||||||||||| |||| || || |||| |||||||||||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 172323 CGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGG 172382 || ||||| |||||||| ||||| || |||||||| ||||||||| ||| ||||| || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 >seq162061 Length=815 Score = 118 bits (130), Expect = 1e-21 Identities = 214/312 (69%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 173266 TTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGACTTGTAGGCATCAGA 173325 |||| ||| |||||||||||| | || || ||||| | || | ||| | | Sbjct 228 TTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGG 287 Query 173326 CCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTTTAATC 173385 ||||| || ||| || ||||||||| | ||||| || || | | || | || Sbjct 288 CCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCTGTATTCCTTATT 347 Query 173386 TACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTTT 173445 || ||||| ||||| |||||||||| || || || || || |||||||| ||| Sbjct 348 TATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAATATTT 407 Query 173446 CGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATG 173505 || | ||| | ||| | ||||| || || || || ||||| |||||||| |||||| Sbjct 408 CGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATG 467 Query 173506 GGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGTGCAG 173565 || ||||| ||| || |||| | || | ||||| || |||||||| || || || || Sbjct 468 GGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCGACCGT--AG 525 Query 173566 AACACATTGTAT 173577 || ||| | ||| Sbjct 526 AAAACACTCTAT 537 >seq597246 Length=243 Score = 116 bits (128), Expect = 4e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 171976 GGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCA 172035 |||||||| | ||||| ||||| || ||||||||||| || |||| | || || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 172036 ATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAAT 172095 || || | ||||| ||||| || |||||||| ||| | || ||||| ||||| |||||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 172096 GGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGA 172155 |||||||||||| || | | | | |||||| | | ||| | | || ||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 172156 AGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCA 172215 | |||||||||| | | | || |||||| | || ||||| ||| ||||| ||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 172216 GC 172217 || Sbjct 3 GC 2 >seq41969 Length=1890 Score = 107 bits (118), Expect = 2e-18 Identities = 145/201 (72%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 173788 GTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCA 173847 ||||| || || || ||| | | || || || ||||| || || || || | ||||| Sbjct 555 GTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-ATCCGTGCAGCG 497 Query 173848 GAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGA 173907 ||||||| || || |||||||||||||| || ||||| ||| | || || ||||| | Sbjct 496 GAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGT 437 Query 173908 GCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTA 173967 || |||||| || || ||||| || ||||| || | |||| || || || || || Sbjct 436 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTA 377 Query 173968 CCAAGAGGTAACGCACTTTAA 173988 ||| | || ||||| |||||| Sbjct 376 CCACGTGGAAACGCTCTTTAA 356 >seq217498 Length=656 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||| | ||| |||| ||| | ||| | |||| | || ||||||||||| | Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| ||| | || ||| | | || || | || ||||| || || ||| Sbjct 381 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCT 440 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | || || ||| | |||||||| | ||||| ||||| Sbjct 441 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 500 Query 172000 ATCATCTCTGGTGCAGTTGTTCC 172022 || |||||||||| || |||| Sbjct 501 ATTCTCTCTGGTGCTATTATTCC 523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583154350644800