Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq351396 262 4e-65 seq162061 235 6e-57 seq664408 147 2e-30 seq597246 122 1e-22 seq623740 107 2e-18 seq472319 93.3 5e-14 seq466979 93.3 5e-14 seq71309 93.3 5e-14 seq63256 93.3 5e-14 seq41969 87.8 2e-12 >seq351396 Length=451 Score = 262 bits (290), Expect = 4e-65 Identities = 274/360 (76%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 163012 GAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACA 163071 || || ||||||| ||| || || | |||||||| || |||||||| |||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 163072 TACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 163131 || || || || || || |||||||| || || || || |||||||||||||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 163132 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTC 163191 |||||||| ||||| || ||||||||| | ||||| |||||||| || || ||||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 163192 ACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 163251 || || | || | || ||||| |||||||| || |||||||| |||||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 163252 ATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGT 163311 | ||||| |||| ||||| || | || || ||||| || | | ||||| || | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 163312 TTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGCT 163371 | ||||||||||| |||||||| || ||||||||||||||||| || ||||| || ||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 235 bits (260), Expect = 6e-57 Identities = 263/349 (75%), Gaps = 2/349 (1%) Strand=Plus/Plus Query 163924 CTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGC-CT 163982 |||||||| || ||||| || || ||||||||| | || ||||||||||||||||| || Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 163983 GATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAG 164042 | || | | | || || ||||| || | ||||||||||| || || || || ||| Sbjct 276 G-TTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 164043 TGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGT 164102 ||| || || || || || ||||| ||||| |||||||||| || || |||||| || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 164103 GGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCC 164162 |||||||| || ||||| || | ||| | |||||||||||||| ||||| |||||||| Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 164163 CTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGG 164222 || ||||||||||||||||| || || |||||| || |||||| |||||||| || Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 164223 AGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACC 164271 || || || ||||| || | | ||| || || || ||||| ||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACC 563 >seq664408 Length=200 Score = 147 bits (162), Expect = 2e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 162769 GTAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGT 162828 || |||||||| || |||||||| || || | || || ||| || | || ||| | ||| Sbjct 192 GTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGT 133 Query 162829 CAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTT 162888 ||||| |||||||| | ||||| || || || ||||| ||||||| ||| || Sbjct 132 CAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGATT 73 Query 162889 GTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGT 162948 || ||||| |||||||||||||| || |||||||| ||||||||||| ||||| || ||| Sbjct 72 GTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGGT 13 Query 162949 GTCTTCGGTGG 162959 || ||||| || Sbjct 12 GTATTCGGCGG 2 >seq597246 Length=243 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 162553 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 162612 ||||| ||||| || ||||||||||| || |||| |||| || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 162613 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 162672 || || || || |||||||| ||||| ||||||||||| | || || |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 162673 CAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAA 162732 | || | || | |||||| | | || | | || ||||| ||||| |||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 162733 CTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGC 162782 || || |||| | ||||||||||| ||||| ||| || |||||||| || Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTGTTGCATACTCAGC 2 >seq623740 Length=225 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 164075 GTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTC 164134 |||||||||| || || |||||| || |||||||| || ||||| || | ||| | | Sbjct 107 GTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAATATTTCGATTCATCCTTTTCTTCC 48 Query 164135 AAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTT 164181 ||||||||||||| ||||| |||||||| || ||||||||||||||| Sbjct 47 AAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTT 1 >seq472319 Length=337 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 163047 CAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCG 163106 ||| || |||||||| ||||||| || || || || || || |||||||| || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 163107 TTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTT 163157 || |||||||||||||| ||||||||||| ||||| || |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq466979 Length=342 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 164299 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCG 164358 ||||| |||||||| ||||||||||| ||| |||| ||||| || ||||| |||||||| Sbjct 216 GAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTTGGTGTTGCT 157 Query 164359 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 164397 ||||| || || || ||| | ||||| || ||| | ||| Sbjct 156 TTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq71309 Length=1427 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 163044 TTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGG 163103 |||||| || |||||||| |||||||| || || || || | |||||||| || Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 163104 TCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 163163 || || |||||||||||||||| ||||||||||| ||||| || ||||| ||| | | Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTC 797 Query 163164 TGCA 163167 |||| Sbjct 798 TGCA 801 >seq63256 Length=1526 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 163849 CTTCTCTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTC 163908 || || ||||| || || || || || ||||| |||||| || | || || | Sbjct 21 CTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTTTA 80 Query 163909 TGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTT 163968 |||| ||||| || |||||||| || ||||| || || ||||||||| | || |||||| Sbjct 81 TGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTT 140 Query 163969 GAACTTGCTC-GCCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTAT 164027 |||||||||| | ||| || | | | || || ||||| || | ||||||| ||| || Sbjct 141 GAACTTGCTCGGTCTG-TTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGATCCAAT 199 Query 164028 TGCTGTCTTCGTT 164040 || || || ||| Sbjct 200 CGCGGTTTTTGTT 212 >seq41969 Length=1890 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 164426 CTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGA 164485 |||||||| | | ||||| ||||| || | ||||| || |||||||| || || | Sbjct 566 CTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-A 508 Query 164486 TTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACG 164545 | | ||||| ||||||| ||| || ||||||||||| ||||| || || | || |||| Sbjct 507 TCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 448 Query 164546 AAGGACTCCGTGCATGGTTAGCACCAGTTGACCAGCCAGGAGAACGGTTTGTCTTCCCAG 164605 | || | ||||| ||| | ||| | || ||||| ||| || | ||||| | Sbjct 447 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 388 Query 164606 AAGAAGTACTGCCGAGAGGTAATGCGCTTTAAT 164638 | || || || || | || || || ||||||| Sbjct 387 AGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552940858636000