Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq351396 228 9e-55 seq162061 215 6e-51 seq664408 158 1e-33 seq597246 156 5e-33 seq217498 149 7e-31 seq41969 149 7e-31 seq63256 123 3e-23 seq623740 96.9 4e-15 seq178439 95.1 1e-14 seq634786 87.8 2e-12 seq466979 87.8 2e-12 seq71309 86.0 7e-12 seq59528 86.0 7e-12 seq472319 84.2 2e-11 seq171123 84.2 2e-11 >seq351396 Length=451 Score = 228 bits (252), Expect = 9e-55 Identities = 261/360 (73%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 167715 GAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACG 167774 ||||| || |||| ||| || || | |||||||| || ||||| || |||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 167775 TATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTC 167834 ||||| || || |||||||||||||| || || || | ||||||||||| || ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 167835 AACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGTNN 167894 |||||||| || || | |||||||||||||| || |||||||| || || ||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 167895 NNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGTTTCAACTTCAACCAGTCT 167954 |||||||| || |||||||| |||||||| ||| Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 167955 ATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGGT 168014 | |||||||| ||| ||| | ||||||||| || | ||||||| ||| | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 168015 CTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 168074 || ||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 215 bits (238), Expect = 6e-51 Identities = 258/348 (74%), Gaps = 2/348 (1%) Strand=Plus/Plus Query 168786 CTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCT 168844 |||||||||||||| || ||||| ||||||||| | || || |||||||| || || ||| Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 168845 CATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAG 168904 || | | || || || ||||| || | ||||||||||| ||||| ||||||||| Sbjct 276 GTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 168905 CGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGT 168964 || || || || || || ||||| ||||| ||||||| || || || ||| || || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 168965 CTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCC 169024 ||||||| || |||||| | || ||| | |||||||| ||||| ||||| |||| || Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 169025 ATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGG 169084 ||||||||||||||| || || || | || || | || |||| | || |||||||| Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 169085 TGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATAC 169132 | || ||||| || ||||| | | | || ||||| |||||||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATAC 562 >seq664408 Length=200 Score = 158 bits (174), Expect = 1e-33 Identities = 150/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 167471 TGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGG 167530 |||||||||||| ||||| || || || || ||||||| ||| | | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 167531 TCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCT 167590 |||||| |||||||| | |||||| | || || ||||||| ||||||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 167591 TGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGG 167650 ||| ||||| ||||||||||||||||| ||||| || ||||| ||| | || || ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 167651 CGTATTCGGCGG 167662 ||||||||||| Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 156 bits (172), Expect = 5e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 167256 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCAC 167315 ||||| ||||| || ||||||||||| || ||||| |||| || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 167316 TTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTC 167375 || || || || |||||||| ||| | | || |||||||| |||||||||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 167376 CAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAA 167435 | || | ||| | |||||| | |||| | | ||||||||||||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 167436 CTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCT 167486 || || |||| | ||||||||||| ||||| |||||||||||| ||| Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGCT 1 >seq217498 Length=656 Score = 149 bits (164), Expect = 7e-31 Identities = 161/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||| | ||| | || |||||| | |||||||| || |||| |||||||| ||| | Sbjct 320 CTTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 379 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 |||||||||||| || | | |||| | ||||| || || ||||||||| ||| ||| | Sbjct 380 GATGATCCCTACTTTATTGACCGCAA-CTTCTGTATTTATTATCGCCTTCATCGCTGCCC 438 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 |||| || || || |||||||| || || || ||| ||||||| | | ||||| |||| Sbjct 439 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 498 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTC 167296 | || |||||||||| || ||||| |||| Sbjct 499 ATATTCTCTCTGGTGCTATTATTCCTACTTC 529 >seq41969 Length=1890 Score = 149 bits (164), Expect = 7e-31 Identities = 150/194 (77%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 169302 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAA 169361 || || ||||| ||| | ||||| ||||| ||||||||||| || ||| | ||||| ||| Sbjct 552 GGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-ATCCGTGCAGCGGAA 494 Query 169362 GATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCA 169421 |||| || |||||||| ||||||||||| || || || || ||||| ||| ||||||| Sbjct 493 GATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCG 434 Query 169422 TGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCC 169481 ||| | ||| || ||||| |||||||| || || | ||||||||||| || || || Sbjct 433 TGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCA 374 Query 169482 CGAGGTAATGCCCT 169495 || || || || || Sbjct 373 CGTGGAAACGCTCT 360 >seq63256 Length=1526 Score = 123 bits (136), Expect = 3e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 168709 TGCTTCTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGAC 168768 |||| || ||||| || || |||||||| ||||| | |||||||| | || || Sbjct 19 TGCTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTT 78 Query 168769 TCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGT 168828 | ||| | ||||| || |||||||||||||| || ||||| ||||||||| | || || | Sbjct 79 TATGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAAT 138 Query 168829 TTGAACTGGCAC-GTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCT 168887 ||||||| || | |||| || | | || || || ||||| || | ||||||| ||| Sbjct 139 TTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGATCCA 197 Query 168888 ATCGCTGTTTTTGTT 168902 ||||| ||||||||| Sbjct 198 ATCGCGGTTTTTGTT 212 >seq623740 Length=225 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 168861 TACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTT--GTTAGCGTCTTTCTCATCT 168918 || ||||| || | |||||| ||| ||||| |||||| ||| || || || || | Sbjct 189 TATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATTT 131 Query 168919 ACCCTCTGGGT-----CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAAT 168973 | || ||||| | || ||||||| || || || ||| || || ||||||| Sbjct 130 ATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAAT 71 Query 168974 CTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATAT 169033 || |||||| | || ||| | |||||||| ||||| ||||| |||| ||||||||||| Sbjct 70 ATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 11 Query 169034 GATGGGTGT 169042 |||||| || Sbjct 10 GATGGGAGT 2 >seq178439 Length=759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 169326 TATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTAC 169385 ||||||||||||||| | || ||| | ||| | ||||||| || |||||||| |||||| Sbjct 613 TATGACTTTGTTTCCTAGGAAATCCGTGCAACGGAAGATCGTGAATTTGAGACTTTCTAC 672 Query 169386 ACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCT 169445 ||||| || || || || || || ||| |||||| ||| | ||| || || | Sbjct 673 ACCAAAAATATTCTTTTAAATGAGGGTATTCGTGGGTGGATGGCAGCTTAGGA------T 726 Query 169446 CATGAGAACTTTGTGTTCCCTGAGGAAGTACT 169477 ||||| || || | ||||||||||| || || Sbjct 727 CATGAAAATCTTATATTCCCTGAGGAGGTTCT 758 >seq634786 Length=218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | | |||| |||||||||||||| || |||||||| || | || ||| Sbjct 143 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 84 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||||||| | ||| | || |||||| |||| ||||| |||| || || |||| Sbjct 83 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 24 Query 168615 TAT 168617 ||| Sbjct 23 TAT 21 >seq466979 Length=342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 169152 ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTT 169211 ||||| | || || || ||||||||||| ||||| ||| | || ||||| || |||||| Sbjct 225 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTT 166 Query 169212 GGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTT 169259 ||| |||| || ||||| | ||||| |||||||||||||| ||| Sbjct 165 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq71309 Length=1427 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/230 (69%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 167648 TGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTC------TCT-GGTTACCT 167700 ||| ||||||| | ||| || || ||||| || || ||||| ||| ||| |||| Sbjct 575 TGGTGTATTCGACAATTCCCTATTTAGTGCTATACATGGTTCCTTGCTTCTTGGTAACCT 634 Query 167701 CTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTC 167760 | || | ||||| | |||| ||| || || | | |||||| || |||| Sbjct 635 CGAGTTTGATCAAGGAAACAATTGAAAATGAATCT---AATGAGGTTTACAATTTTGGTC 691 Query 167761 AGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCC 167820 | || |||||||| ||||| || || || |||||||| || || | ||||||| Sbjct 692 AAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTTCCGATTAATCTTCC 751 Query 167821 AATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCA 167870 |||| |||| ||||||||||| || || | ||||| |||||| | ||| Sbjct 752 AATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTCTGCA 801 >seq59528 Length=1577 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 167646 GCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCG 167705 ||||| ||||||||||| || || || ||||| ||||| ||||| |||| |||||| Sbjct 418 GCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 477 Query 167706 CTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAA 167765 || | | |||| | |||| ||| || || | |||||||| || ||||| || Sbjct 478 TTGATCAGGGAAATTATTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAG 537 Query 167766 GAAGAGACGTATAACATCGTCGCTG 167790 |||||||| ||||| || || |||| Sbjct 538 GAAGAGACTTATAATATTGTGGCTG 562 >seq472319 Length=337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 167750 CAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCG 167809 ||| || ||||| || ||||||| ||||| || || |||||||||||||| || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 167810 CCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTT 167863 | ||||||||||| || ||||||||||| || || | |||||||| || Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTGTT 224 >seq171123 Length=784 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 167924 CAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATA--GTTCTGGTAAGGTTCTG 167981 |||||| || |||||| | || ||||| ||| | |||||| || || ||| | Sbjct 642 CAACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATACAGTCAAGGCCGCGTTATT 701 Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 |||||| | || | ||||||||||| | | ||||||||||| |||||| | || Sbjct 702 AATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGA 761 Query 168042 AATGCTCACAACTTCCCTCTCGA 168064 |||||||||||||||||||| || Sbjct 762 AATGCTCACAACTTCCCTCTAGA 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555939677032000