Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq351396 284 1e-71 seq162061 235 7e-57 seq664408 161 1e-34 seq597246 143 3e-29 seq41969 134 2e-26 seq623740 127 2e-24 seq63256 114 2e-20 seq217498 100 3e-16 seq171123 89.7 6e-13 seq71309 89.7 6e-13 seq472319 87.8 2e-12 >seq351396 Length=451 Score = 284 bits (314), Expect = 1e-71 Identities = 261/330 (79%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 182451 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTC 182510 |||||||| || |||||||| |||||||| ||||| || || || || ||||| || || Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 182511 GGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 182570 || || || ||||||||||| || ||||||||||| ||||| || ||||||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 182571 GCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTC 182630 ||||| |||||||| || |||||||||||||| || | ||| | || ||||| ||| Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 182631 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAAC 182690 ||||| || |||||||| |||||||| || | ||||| |||| ||||| || |||| Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 182691 ACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 182750 |||||||| ||| | | ||||| ||| ||||||||||||||| ||||| || ||||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 182751 GCACACAACTTCCCACTAGATCTTGCTGCT 182780 || ||||||||||| ||||| || |||||| Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 235 bits (260), Expect = 7e-57 Identities = 253/335 (76%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 183484 CTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTG 183543 |||||||| || ||||| || || ||||||||| | || || |||||||||||||| | Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 183544 ATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGT 183603 || | || ||||| ||||| || | ||||||||||| || || |||||||| | Sbjct 276 GTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCT 335 Query 183604 GTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTA 183663 ||||||||||| ||||||||||| || ||| ||||||||||| || ||||| || ||| Sbjct 336 GTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTA 395 Query 183664 GCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCC 183723 |||||||| ||| ||||| | | ||| | || || || || || |||||||| ||||| Sbjct 396 GCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 455 Query 183724 TTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGT 183783 || ||||||||||||||||| || || |||| | || || || | ||||| ||||| Sbjct 456 TTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGA 515 Query 183784 GTCACAGTAGAGAATACATTGTATGAAGATGGAGA 183818 | || ||||| || || | | ||| || || || Sbjct 516 GCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 550 >seq664408 Length=200 Score = 161 bits (178), Expect = 1e-34 Identities = 151/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 182177 TGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGG 182236 ||| |||||||| ||||| || || || || ||||||| ||||| | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 182237 TCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTT 182296 |||||| ||||| |||| ||||| | ||||| || || | ||||||| |||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 182297 GGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGG 182356 || ||||| || ||||||||||| ||||||||||| ||||||||||| |||||||| || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 182357 TGTATTCGGTGG 182368 ||||||||| || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 143 bits (158), Expect = 3e-29 Identities = 174/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 181962 TATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCAC 182021 ||||| ||||| || |||||||||||| || | || | || || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 182022 TTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 182081 || |||||||| ||||||||||| || ||||||||||| | || || |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 182082 CAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC---CTACATGGGACGTGAGTGG 182138 | || ||||| | |||||| | | || | || || || ||||| ||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGG 55 Query 182139 GAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCT 182192 |||||| || ||| || ||||||||||| ||||| ||| |||||||| ||| Sbjct 54 GAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGCT 1 >seq41969 Length=1890 Score = 134 bits (148), Expect = 2e-26 Identities = 159/214 (74%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 183986 CTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGA 184045 |||||||| | | || || ||||| || | ||||| ||||||||||| || || | Sbjct 566 CTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-A 508 Query 184046 TCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATG 184105 || | ||||| ||||||| ||||||||||| |||||||| || || || ||| | || | Sbjct 507 TCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 448 Query 184106 AAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAG 184165 | || | ||||| ||| | ||| || ||||| || ||||| ||| ||||||| || | Sbjct 447 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 388 Query 184166 AGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 ||||||| |||| | || || ||||||| ||| Sbjct 387 AGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 354 >seq623740 Length=225 Score = 127 bits (140), Expect = 2e-24 Identities = 146/191 (76%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 183558 TTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT--GTCAGTGTATTCCTTATC 183615 ||| ||||| || | |||||| ||| || || |||||| || |||||||||||| Sbjct 190 TTATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATT 132 Query 183616 TATCCACTGGG-TCAGTC--TTCA--TGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAA 183670 ||||||||||| | | | ||| ||||||||||| || ||||| || |||||||||| Sbjct 131 TATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAA 72 Query 183671 TCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATA 183730 | ||| ||||| | | ||| | || || || || || |||||||| ||||| || |||| Sbjct 71 TATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATA 12 Query 183731 TGATGGGAGTT 183741 ||||||||||| Sbjct 11 TGATGGGAGTT 1 >seq63256 Length=1526 Score = 114 bits (126), Expect = 2e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 183407 TGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGAC 183466 || |||| ||||| || || | ||||| || ||| |||||||| || | || || Sbjct 19 TGCTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTT 78 Query 183467 TCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGT 183526 | |||| ||||| || |||||||| || ||||| || || ||||||||| | || || | Sbjct 79 TATGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAAT 138 Query 183527 TTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTA 183586 ||||||||||||| | || | || ||||| ||||| || | ||||||| ||| | Sbjct 139 TTGAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGATCCAA 198 Query 183587 TTGCTGTTTTTGT 183599 | || |||||||| Sbjct 199 TCGCGGTTTTTGT 211 >seq217498 Length=656 Score = 100 bits (110), Expect = 3e-16 Identities = 127/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||||| || |||| ||||| ||||| |||||||||| ||| | ||| | ||||| Sbjct 348 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 407 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || | || ||| | || || ||||| || ||||| || ||||| || || Sbjct 408 -TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 466 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTT 181991 || || ||||||| | | ||||| ||||| || ||||||||||| || Sbjct 467 GCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTCTCTCTGGTGCTATT 518 >seq171123 Length=784 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 182630 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATG--GTCAGGGTCGTGTCCTT 182687 |||||| || |||||| | || ||||| || | ||||| |||| || || || || Sbjct 642 CAACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATACAGTCAAGGCCGCGTTATT 701 Query 182688 AACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGT 182747 || ||||| | ||| | | ||||||||| | ||||||||||||| ||||| | || Sbjct 702 AATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGA 761 Query 182748 AACGCACACAACTTCCCACTAGA 182770 || || ||||||||||| ||||| Sbjct 762 AATGCTCACAACTTCCCTCTAGA 784 >seq71309 Length=1427 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 182453 TTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGG 182512 |||||| || |||||||| |||||||| ||||| || || | ||||| || || Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 182513 TCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 182572 || || ||||||||||| |||| ||||||||||| ||||| || ||||| ||| | | Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTC 797 Query 182573 TGCA 182576 |||| Sbjct 798 TGCA 801 >seq472319 Length=337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 182456 CAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCG 182515 ||| || |||||||| ||||||| ||||| || || || || ||||| || || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 182516 TTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTT 182566 || ||||||||||| || ||||||||||| ||||| || |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606602254484000