Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq351396 262 4e-65 seq162061 215 6e-51 seq597246 183 3e-41 seq664408 168 7e-37 seq41969 156 5e-33 seq217498 138 1e-27 seq178439 104 3e-17 seq63256 102 9e-17 seq466979 100 3e-16 seq623740 96.9 4e-15 >seq351396 Length=451 Score = 262 bits (290), Expect = 4e-65 Identities = 256/330 (78%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 165421 GGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTC 165480 ||||| || ||||| ||||| |||||||| ||||| || || ||||| || || || || Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 165481 GGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTC 165540 || || | || |||||||| || |||||||| || ||||| | ||||||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 165541 GCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 165600 || || ||||||||||| || ||||||||||||||| | ||| |||| || ||||| ||| Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 165601 AACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCT 165660 ||||| || |||||||| |||||||| ||| | ||||||||||| | || | Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 165661 ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 165720 ||||||||||| | | ||||| ||| ||| ||||||||||| ||||| || ||||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 165721 GCTCACAACTTCCCCCTCGACCTCGCTGCT 165750 |||||||||||||| || ||||| |||||| Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 215 bits (238), Expect = 6e-51 Identities = 261/353 (74%), Gaps = 2/353 (1%) Strand=Plus/Plus Query 166459 TTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTC 166518 || |||||||||| |||||||| ||||| ||||||||| | || || |||||| | |||| Sbjct 211 TTTCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTC 270 Query 166519 G-TCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTC 166577 | ||| | | | || || || ||||||||| | || |||||||| || || || || Sbjct 271 GGTCTGTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTT 329 Query 166578 GTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTC 166637 ||| ||| || || || || || ||||| ||||| ||||||| || || || ||| Sbjct 330 GTTTCTGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTT 389 Query 166638 GGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTG 166697 || || ||||||| || |||||| |||||||| | |||||||| || || ||||| || Sbjct 390 GGCGTAGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTG 449 Query 166698 AACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATC 166757 |||||||||||||||||||| || || || | | || | || |||| | || || Sbjct 450 AACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATT 509 Query 166758 CATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATAC 166810 ||||| | || ||||| |||||||| | | | || ||||| |||||||| Sbjct 510 CATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATAC 562 >seq597246 Length=243 Score = 183 bits (202), Expect = 3e-41 Identities = 182/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 164920 GGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCA 164979 |||||| || | || || ||||| || |||||||||||| | |||| |||| || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 164980 ATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAAC 165039 |||||| | ||||| || || ||||||||||||||| | | ||||| ||||| ||||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 165040 GGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGT 165099 ||||||||||| || | |||| | |||||| | | ||||||||||| || |||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 165100 CGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATA 165155 |||||||||||||| || ||| | |||||||||||||||||| || ||||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATA 8 >seq664408 Length=200 Score = 168 bits (186), Expect = 7e-37 Identities = 155/196 (79%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 165144 TTGC-GTAGCATANNNNGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTT 165202 |||| || ||||| || ||||| || |||||| | || |||||| || | || ||| Sbjct 197 TTGCTGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTA 138 Query 165203 TCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 165262 | |||||||| || |||||||||||||||||| | || || ||||||| ||| |||| || Sbjct 137 TTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTA 78 Query 165263 TGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTG 165322 || | || ||||| ||||| || ||||| ||||||||||| ||||||||| | || || | Sbjct 77 TGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAG 18 Query 165323 CTGGGGTATTCGGTGG 165338 |||| |||||||| || Sbjct 17 CTGGTGTATTCGGCGG 2 >seq41969 Length=1890 Score = 156 bits (172), Expect = 5e-33 Identities = 154/198 (78%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 166980 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAG 167039 || || ||||| ||| | ||||| ||||| ||||||||||| ||| | | ||||| || Sbjct 552 GGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGAA-TCCGTGCAGCGGAA 494 Query 167040 GATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCT 167099 |||| ||| ||||| || ||||| ||||| || ||||| || || |||||||| ||| | Sbjct 493 GATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCG 434 Query 167100 TGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCT 167159 ||||||||| || ||||| |||||||| | | | |||||||||| |||||||| || Sbjct 433 TGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCA 374 Query 167160 AGAGGTAACGCTCTCTAA 167177 | || |||||||| ||| Sbjct 373 CGTGGAAACGCTCTTTAA 356 >seq217498 Length=656 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||| | ||| | ||| ||| | ||||||||||| |||| |||||||||||| | Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 164824 ATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCC 164882 |||||||| ||| | |||| || | ||| ||||||| || ||||||||||| || Sbjct 381 ATGATCCCTACTTTATTGACCGCAAC-TTCTGTATTTATTATCGCCTTCATCGCTGCCCC 439 Query 164883 CCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAA 164942 || || || ||||||||||||||||| ||||| | |||||| || | || || ||||| Sbjct 440 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 499 Query 164943 CATCATCTCTGGTGCTGTCGTTCCGTCTTC 164972 || ||||||||||| | |||| |||| Sbjct 500 TATTCTCTCTGGTGCTATTATTCCTACTTC 529 >seq178439 Length=759 Score = 104 bits (114), Expect = 3e-17 Identities = 114/152 (75%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 167004 TATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTAT 167063 ||||||||||||||| | ||| | | ||| | || |||| ||| ||||| || ||||| Sbjct 613 TATGACTTTGTTTCCTAGGAAATCCGTGCAACGGAAGATCGTGAATTTGAGACTTTCTAC 672 Query 167064 ACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCT 167123 ||||| || ||||| || ||||||||||| ||| ||||||||| || || | Sbjct 673 ACCAAAAATATTCTTTTAAATGAGGGTATTCGTGGGTGGATGGCAGCTTAGGA------T 726 Query 167124 CATGAGAGTTTCGTATTCCCTGAAGAGGTTCT 167155 ||||| | | | |||||||||| |||||||| Sbjct 727 CATGAAAATCTTATATTCCCTGAGGAGGTTCT 758 >seq63256 Length=1526 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 166389 CTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTT 166448 || || ||||| || || || ||||| ||||| | ||||| || | || || | Sbjct 21 CTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTTTA 80 Query 166449 TGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTT 166508 ||| | ||||| ||||||||||| |||||||| ||||| ||||||||| | || || ||| Sbjct 81 TGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTT 140 Query 166509 GAAATCGCTC-GTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTAT 166567 ||| | |||| |||| || | || || || ||||||||| | || |||| ||| || Sbjct 141 GAACTTGCTCGGTCT-GTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGATCCAAT 199 Query 166568 TGCTGTCTTCGTT 166580 || || || ||| Sbjct 200 CGCGGTTTTTGTT 212 >seq466979 Length=342 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 ||||||| |||||||| ||||||||||| || || ||| ||| |||||| || ||||| Sbjct 225 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTT 166 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTT 166937 ||| |||| ||| ||||| | ||||| |||||||||||||| ||| Sbjct 165 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq623740 Length=225 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 166615 GTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTC 166674 ||||||| || || || ||| || || ||||||| || |||||| |||||||| | | Sbjct 107 GTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAATATTTCGATTCATCCTTTTCTTCC 48 Query 166675 AAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGT 166720 ||||||| || || ||||| |||||||||||||||||||||| || Sbjct 47 AAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558967055603200