Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq307656 165 2e-35 seq113513 138 2e-27 seq5401 134 3e-26 seq385372 116 8e-21 seq213696 111 3e-19 seq138762 105 1e-17 seq17435 105 1e-17 seq84174 98.7 2e-15 seq32537 95.1 3e-14 seq117604 93.3 9e-14 seq37865 89.7 1e-12 seq88183 87.8 4e-12 >seq307656 Length=504 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||||||||| ||||| || ||| ||||| | || ||||| || || Sbjct 275 GTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTTAGAGTGCGACCGTCTTCTAGTTG 216 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| ||||| || || ||||| |||||||| || |||||||||||||| |||||||| Sbjct 215 TTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGTATGCCTTCTTTGTCCTGAATTTT 156 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| || ||||| ||||||||| |||||||| || |||| || || || || Sbjct 155 TGACTTGACATTATCAATAGTGTCCGAAGCCTCCACTTCGAGTGTAATGGTTTTGCCAGT 96 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 95 TAGAGTCTTGACGAAAATCTGCAT 72 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| || || || || || ||||| ||| || || | ||||| || | || Sbjct 503 GTGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATTG 444 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| || || || || |||||||| ||||| ||||| ||||| || || || Sbjct 443 TTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGGATCTT 384 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||||||||| || || || |||||||||| || || || || Sbjct 383 CGATTTCACATTGTCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCGT 324 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || || || | |||||| Sbjct 323 CAAAGTCTTGACAAAGATTTGCAT 300 >seq113513 Length=1062 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| ||||| || ||||| || || || || || ||||| ||| Sbjct 993 ACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTCG 934 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| |||| ||||| || ||||| || Sbjct 933 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCCTGG 874 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| || ||||| || || || | ||||| Sbjct 873 ATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTG 814 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 813 CCCGTCAGGGTCTTCACGAAGATCTGCAT 785 >seq5401 Length=4188 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || || || || || || || | ||||| ||| Sbjct 4141 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATCCTCG 4082 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || || || ||| Sbjct 4081 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGA 4022 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || ||||||||||| ||||| || | ||| | ||||| Sbjct 4021 ATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTG 3962 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 3961 CCGGTCAGGGTCTTCACGAAGATCTGCAT 3933 >seq385372 Length=416 Score = 116 bits (128), Expect = 8e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || | ||||| ||||| || || || || ||| Sbjct 191 ACGAGGTGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCGAGGGTGTGGCCGTCCTCG 132 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || || || || Sbjct 131 AGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGG 72 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||||||||| || |||||||| || ||||| || || || | ||||| Sbjct 71 ATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTG 12 Query 195112 CCTGTCA 195118 || |||| Sbjct 11 CCCGTCA 5 >seq213696 Length=664 Score = 111 bits (122), Expect = 3e-19 Identities = 136/185 (74%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | |||||||| || ||||| |||||||| ||||| || | || || || Sbjct 426 ACCAGGTGGATTGTGGACTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCGTCCTCC 367 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTG---GTCTGGAGGAATGCCTTCTTTGTCT 195048 |||||||| || |||||||| ||||| || || ||| || || |||||||| || || Sbjct 366 AGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGCTGGTCCGGCGGGATGCCTTCCTTATCC 307 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || || ||| || || ||||||||||| || || || || ||||| | ||| Sbjct 306 TGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTC 247 Query 195109 TTTCC 195113 || || Sbjct 246 TTGCC 242 >seq138762 Length=915 Score = 105 bits (116), Expect = 1e-17 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || | ||||| || | || || | || || ||| Sbjct 693 ACGAGGTGCAGCGTGGACTCCTTCTGCACGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCG 634 Query 194992 AGCTGCTTACCTG-CGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || | ||||||| || || || ||| | || || ||||| | ||||| || Sbjct 633 AGCTGCTTTCCCGGCGAAGATGAGACGCTGCTGGCCCGGCGGGATGCCCTGCTTGTCCTG 574 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| ||||| ||||||||||| || ||||| || || || | ||||| Sbjct 573 GATCTTAGCCTTAACGTTGTCAATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTT 514 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 513 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 484 >seq17435 Length=2785 Score = 105 bits (116), Expect = 1e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| |||| || | || |||||||||||||| || || |||||||| || | || Sbjct 1834 CTGAGCCTCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAATGTG 1775 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||||||| | |||||| || || || || || | ||| |||||||| || |||||| Sbjct 1774 CGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGGGGGATGCCT 1715 Query 195040 TCTTTGTCTTGAA 195052 || ||||| |||| Sbjct 1714 TCCTTGTCCTGAA 1702 >seq84174 Length=1294 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||||||||| ||||| || || ||||| || | || | |||||| || Sbjct 122 ACAAGATGAAGAGTGGACTCCTTTTGGATGTTATAATCCGCCAAGGTACGCCCATCCTCC 63 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || ||||| | || || ||||||||||| || || ||||| || Sbjct 62 AGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 3 Query 195052 AT 195053 || Sbjct 2 AT 1 >seq32537 Length=2132 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| || || || || ||||| || ||||| || | ||||| ||| Sbjct 107 ACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCG 48 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 |||||||| || |||||||| ||||| || ||||| ||||| ||||| Sbjct 47 AGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCCGGAGGGATGCC 1 >seq117604 Length=1036 Score = 93.3 bits (102), Expect = 9e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || || || || | ||||| || Sbjct 921 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCC 980 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||||||||||| |||||||| || || || || || ||||||||||| || ||||| Sbjct 981 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTC 1036 >seq37865 Length=1986 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || | ||||| ||||| || || | || || ||| Sbjct 119 ACGAGGTGCAGTGTGGACTCCTTCTGCACGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCG 60 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 59 AGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 1 >seq88183 Length=1257 Score = 87.8 bits (96), Expect = 4e-12 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 |||| ||||| || ||| ||||| |||| ||| || || || || | ||||| |||| Sbjct 784 CAAGATGAAGGGTACTCTCCTTTTGGATATCGTAGTCAGCCAGGGTGCGTCCATCCTCGA 725 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGG-AATGCCTTCT-TTGTCTTG 195050 ||||||| || || || | || ||| |||||| |||| ||| || | ||| | || Sbjct 724 GCTGCTTGCCAGCAAATGTGAGGTCTTGCTGGTCTAGAGGGAAT--CTCCAATTGGCATG 667 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| ||| ||||| || || || || ||||||||||| | ||||| Sbjct 666 AATCTTAGCCTTGACAGTCTTGATGGTATCGGAGCTCTCAACTTCAAGGGTGATGGTCTT 607 Query 195111 TCCTGT 195116 || || Sbjct 606 GCCCGT 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1100011696080060