Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq12510 100 2e-16 seq5401 96.9 2e-15 seq307656 93.3 3e-14 seq6868 91.5 9e-14 seq87352 89.7 3e-13 seq113513 82.4 5e-11 >seq12510 Length=3164 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||| | ||| || ||||| ||||| || |||| ||| | || |||| || Sbjct 3084 AACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTC 3025 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| ||||| || || || ||||| ||||||| | || | | ||||||||| Sbjct 3024 CAGCTGCTTTCCAGCGAAGATCAGTCGCCGCTGGTCCGGGGGGATGCACTCCTTGTCCTG 2965 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 |||||| || || || | ||||| ||| || ||| || || | || |||| Sbjct 2964 GATCTTCGCCTTCAC--AT--TGTCGATGGTATCAGAGGACTCGACTTCAAGTGTGATGG 2909 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||| |||||||||||||||||||| Sbjct 2908 TCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 2875 >seq5401 Length=4188 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| | ||| | || |||| || ||||| || || || || Sbjct 4123 TCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAG 4064 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | |||||||| || |||||| |||||| Sbjct 4063 ATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGAATCTTAGCCTTGACGTTG 4004 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || || | ||| ||||| || || || || |||||||| Sbjct 4003 TCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 3944 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3943 AAGATCTGCAT 3933 >seq307656 Length=504 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| || | || ||||||| || ||||| || || |||||||| Sbjct 298 CCTCCCCTCAATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTT 239 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || || || ||||| || || || || || |||||||||||| | || Sbjct 238 AGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGT 179 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTC 34930 | || || ||||| ||| || ||||| || |||| || | ||| ||||| Sbjct 178 ATGCCTTCTTTGTCCTGAATTTTTGACTTGAC--AT--TATCAATAGTGTCCGAAGCCTC 123 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || |||| || |||||||| || || |||||||| || || ||||||||| Sbjct 122 CACTTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCATA 71 >seq6868 Length=3892 Score = 91.5 bits (100), Expect = 9e-14 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || |||||||| || ||||| || Sbjct 2918 TCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAG 2977 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||| |||||||| || || |||||| Sbjct 2978 ATGAGCCGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTTG 3037 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | | ||| || || | || ||||| || ||||| || |||||||| Sbjct 3038 TCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACG 3097 Query 34971 AAGATCTGCATATTC 34985 ||||||||||| ||| Sbjct 3098 AAGATCTGCATCTTC 3112 >seq87352 Length=1264 Score = 89.7 bits (98), Expect = 3e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884 |||| || ||||| || |||| || || || || ||| ||||| | || | ||||||| Sbjct 1237 CATCCTCAAGCTGCTTGACGGCGAAAATGAGGCGCTGCGGGTCTGGAGGGATGCCCTCCT 1178 Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTA 34944 |||| ||||| |||||| | || | ||| || ||| || |||| ||| | Sbjct 1177 TGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTAA 1118 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || || ||||| |||||||||||||||||||| Sbjct 1117 TGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 1081 >seq113513 Length=1062 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || || || ||||| ||||| | ||| | | |||| || Sbjct 993 ACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTCG 934 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | | | ||||||||||| Sbjct 933 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCCTGG 874 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | | ||| || || | || ||||| || Sbjct 873 ATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTG 814 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 ||||| || |||||||| ||||||||||| ||| Sbjct 813 CCCGTCAGGGTCTTCACGAAGATCTGCATCTTC 781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321997877483040