Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq351396 246 3e-60 seq664408 152 6e-32 seq597246 132 5e-26 seq59528 95.1 1e-14 seq71309 87.8 2e-12 seq472319 84.2 2e-11 >seq351396 Length=451 Score = 246 bits (272), Expect = 3e-60 Identities = 261/344 (76%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||||||||| |||||||||||||| || || || | Sbjct 105 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTAGCTCGGTTGATG 164 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| || ||| ||||| || | | || ||||| || Sbjct 165 ATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGATTGGTTGAAATTG 224 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| || |||| ||| | ||||| ||||| || || || Sbjct 225 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAGATTCCTACT 284 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||||||||| ||||| | ||||||| |||||||| |||||| ||| Sbjct 285 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 344 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| |||||||||||||| || || |||||| Sbjct 345 AAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGA 404 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTC 84328 || || |||||||| | || || ||||||| |||||||| Sbjct 405 CCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 448 >seq664408 Length=200 Score = 152 bits (168), Expect = 6e-32 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 84381 CCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCC 84440 || |||||||||||||| || || |||||||| || ||||||||||||||||| || || Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 84441 GCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAG 84500 |||||||| |||| ||| ||||||| | || || || || | ||||| ||||||||| Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 84501 AAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCA 84560 || ||||| || | ||| || | | ||| ||||||| || || ||||| ||||| Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 181 Query 84561 GAGTAAGCAACA 84572 ||||| |||||| Sbjct 182 GAGTATGCAACA 193 >seq597246 Length=243 Score = 132 bits (146), Expect = 5e-26 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 84557 AGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTC 84616 ||| ||||| |||||| ||||| ||||||||||| | ||| | ||||||||| || Sbjct 1 AGCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTC 60 Query 84617 ACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCC 84676 ||||||||| ||| | | |||||| | |||||| | |||| || | |||||| || Sbjct 61 ACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACC 120 Query 84677 ACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACC 84736 |||||| |||| ||| || || | | ||| ||||||||||| || || || || | || Sbjct 121 ACCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCC 180 Query 84737 AATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGA 84796 || || || | |||| | |||||||| || || |||||||| || | | ||| Sbjct 181 GATCGCCGCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGA 240 Query 84797 ACC 84799 ||| Sbjct 241 ACC 243 >seq59528 Length=1577 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 84253 CAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGA 84312 |||| |||||||||||||| || || |||||||| || |||||||| | || || Sbjct 562 CAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATT 503 Query 84313 CATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGA 84372 ||||||| || |||| | ||| | | ||| || || | ||||||||||| ||| | Sbjct 502 CATTTTCAATAATTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTAA 443 Query 84373 ATAGAGCTCCACCGAATACACCAGC 84397 |||| | || |||||||||||||| Sbjct 442 ATAGGGAGCCGCCGAATACACCAGC 418 >seq71309 Length=1427 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 84174 GCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGA 84233 |||| |||||||||||||| |||||| |||||||| | ||||| |||||||| | Sbjct 800 GCAGACAAGAAAAAGTGGAAAGAACGTGAGTTGTTGAAACATGCATATTGGAAGATTAAT 741 Query 84234 CGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTG 84293 || || || || || || |||||||||||||| || || |||||||| || ||| Sbjct 740 CGGAAAAAATAACCATGCACAAACACAATATTATAAGTCTCTTCCTCTTGACCAAAATTG 681 Query 84294 TAA 84296 ||| Sbjct 680 TAA 678 >seq472319 Length=337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 84180 AAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCG 84239 || || ||||| | ||||||| |||||||| |||||| |||||||| | | || Sbjct 224 AACAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATTGGCCA 283 Query 84240 AAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTG 84293 || || || |||||||| |||||||||||| | || || |||||||| || ||| Sbjct 284 AAATAACCATGAGCAGCCACAATATTATAAATCTCTTCCTCTTGACCAAATTTG 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566516461914400