Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1192 104 2e-16 seq13300 102 7e-16 seq148418 98.7 8e-15 seq8754 98.7 8e-15 seq1011 98.7 8e-15 seq196998 95.1 1e-13 seq150422 93.3 3e-13 seq122237 93.3 3e-13 seq49510 89.7 4e-12 >seq1192 Length=6114 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 |||| | || || || ||||| ||||||||||| ||||| | || || || || || | Sbjct 3790 TTACCAAGGCTGTGATTACTGTTCCAGCATATTTCAATGATGCTCAGCGGCAGGCCACCA 3731 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | |||||||| ||||||||||| ||| ||||| | || |||||||| || ||||||| Sbjct 3730 AGGATGCTGGTCGTATTGCTGGGCTTGATGTTGAGAGGATCATCAATGAGCCAACTGCTG 3671 Query 550512 CTGCACTTGCATATGGA 550528 |||| || | |||||| Sbjct 3670 CTGCTCTGTCTTATGGA 3654 >seq13300 Length=3096 Score = 102 bits (112), Expect = 7e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || || || || || ||||| || | || || || || |||| Sbjct 1507 ATGCTGTTGTCACTGTCCCTGCCTACTTCAACGACTCCCAGAGGCAGGCCACCAAGGATG 1448 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||||| || |||||| | || || ||||||||||| ||||||||||| Sbjct 1447 CTGGAGTGATTGCTGGTCTGAATGTTATGCGGATCATCAATGAACCAACTGCTGCTGCTA 1388 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| ||||| || Sbjct 1387 TTGCTTATGGTCTTGACAA 1369 >seq148418 Length=871 Score = 98.7 bits (108), Expect = 8e-15 Identities = 177/257 (69%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 368794 GTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTT 368853 || || ||||| ||||| ||||| || || ||||| |||| |||| || || ||||| Sbjct 462 GTATTTGATTGTTGGTTCGAATCCGGCTCAATGCCATATGCTCAACAGCACTACCCATTC 521 Query 368854 GATAAC--GCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAAT 368911 || ||| ||||| | || |||| || || ||| || || | | ||| Sbjct 522 GAGAACAAGCAAA---CATT-----TGATGAATCTTTCCCGGCAGACTTCATTGCTGAAG 573 Query 368912 CAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCG 368971 || || ||||| || |||||||| ||||| || ||||| | ||||||||| | || | Sbjct 574 GCATCGACCAAACCCGAGGTTGGTTCTATACACTCTTAGTGATTTCCACAGCTTTGTTTG 633 Query 368972 ATAAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAATGCATCTGATGGTCAAA 369031 | ||||| | || |||||| | ||||| | ||| | || || || || ||||||| Sbjct 634 ACAAACCACCATTCAAAAATTTGATAGTCAACGGTTTAGTATTGGCCTCAGACGGTCAAA 693 Query 369032 AGATGTCAAAAAGTAAG 369048 ||||| ||||| ||| Sbjct 694 AGATGAGTAAAAGAAAG 710 >seq8754 Length=3589 Score = 98.7 bits (108), Expect = 8e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| ||||| ||||| | || || || ||||| || |||||| Sbjct 2051 GCTGTTATTACAGTGCCAGCTTATTTCAATGATGCCCAGCGCCAGGCTACCAAGGATGCT 1992 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||||||||||| | || || | ||||||||||| || ||||||||||| || Sbjct 1991 GGTAGGATTGCTGGACTGGAGGTGCTCAGGATTATCAATGAGCCCACTGCTGCTGCTCTG 1932 Query 550520 GCATATGGA 550528 |||||||| Sbjct 1931 TCATATGGA 1923 >seq1011 Length=6351 Score = 98.7 bits (108), Expect = 8e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| || || ||||| | || ||||| || || || |||||| Sbjct 2174 GCTGTGATCACAGTTCCAGCTTACTTCAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 2233 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||||||| |||| | | || ||||| ||||| ||||||||||| ||| Sbjct 2234 GGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACTGCTGCTGCTCTT 2293 Query 550520 GCATATGGA 550528 | |||||| Sbjct 2294 TCGTATGGA 2302 >seq196998 Length=706 Score = 95.1 bits (104), Expect = 1e-13 Identities = 88/107 (82%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 368599 AGAAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTG--ATGATGGTGAAGAAA 368656 |||||||| |||||||| |||||| ||||||| |||| || | | ||||||||||||| Sbjct 221 AGAAGTAGATTTTGGGGTACTCCACTTCCAGTTTGGA--TCAGCCAAGATGGTGAAGAAA 278 Query 368657 TTGTTTGTATAGGTTCAATTAAAGAA-TTGCAAGAATTATCTGGTGT 368702 ||||| ||||| ||| ||| ||||| ||| ||| ||||||||| || Sbjct 279 TTGTTGTTATAGATTCCATTGAAGAACTTGAAAG-ATTATCTGGCGT 324 >seq150422 Length=862 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | || || || ||||| || || || || || ||||| || | ||||| Sbjct 17 AAGTCACCAAGGCTGTGATCACTGTCCCTGCTTACTTCAACGACTCGCAGAGGACAGCTA 76 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| | ||||||| ||||| || ||||| ||||||| Sbjct 77 CAAAAGATGCTGGCCGCATTGCTGGGTTGGATGTTCTCCGTATCATAAATGAGCCTACTG 136 Query 550509 CTGCTGCACTTGCATATGGACTTGATAAA 550537 | || | | |||||||| |||| ||| Sbjct 137 CAGCGTCGTTAGCATATGGTTTTGAGAAA 165 >seq122237 Length=1007 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | || || || ||||| || || || || || ||||| || | ||||| Sbjct 620 AAGTCACCAAGGCTGTGATCACTGTCCCTGCTTACTTCAACGACTCGCAGAGGACAGCTA 561 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| | ||||||| ||||| || ||||| ||||||| Sbjct 560 CAAAAGATGCTGGCCGCATTGCTGGGTTGGATGTTCTCCGTATCATAAATGAGCCTACTG 501 Query 550509 CTGCTGCACTTGCATATGGACTTGATAAA 550537 | || | | |||||||| |||| ||| Sbjct 500 CAGCGTCGTTAGCATATGGTTTTGAAAAA 472 >seq49510 Length=1741 Score = 89.7 bits (98), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || || || || || || ||||| || | || || || || |||| Sbjct 235 ATGCTGTTGTCACCGTCCCTGCCTACTTCAACGACTCCCAGAGACAGGCCACCAAGGATG 294 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| |||||||| || |||||| | || || |||||||| || ||||||||||| Sbjct 295 CTGGTGTGATTGCTGGTCTGAATGTTATGCGGATCATCAATGAGCCAACTGCTGCTGCTA 354 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| ||||| || Sbjct 355 TTGCTTATGGTCTTGACAA 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3994065397128200