Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq351396 224 3e-54 seq217498 116 1e-21 seq597246 95.1 4e-15 seq472319 86.0 2e-12 >seq351396 Length=451 Score = 224 bits (248), Expect = 3e-54 Identities = 251/333 (75%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 26453 AATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGG 26512 ||| | || || || ||||| ||||| |||||||| ||||||||||| ||||| || || Sbjct 424 AATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGT 365 Query 26513 TACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTC 26572 || ||||| ||||||| || || ||||| ||||| || ||| |||||| | || ||| Sbjct 364 TATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTC 305 Query 26573 TTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATG 26632 || | ||| ||||||| || || || || ||| | || || | ||||| | || ||| Sbjct 304 TTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATG 245 Query 26633 GCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGAT 26691 || || |||||||||||||| || || ||||| || ||||| ||| || || | | | Sbjct 244 GCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTT 185 Query 26692 AATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGA 26751 | || ||| ||||||||| | | ||||||||||| || || | ||||| |||||||| Sbjct 184 ATTA-ATACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGA 126 Query 26752 GCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| ||||| || || ||| |||| Sbjct 125 ACGTAATGCTCACAACTTCCCTCTAGACCTAGC 93 >seq217498 Length=656 Score = 116 bits (128), Expect = 1e-21 Identities = 134/175 (77%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || ||||| |||||||| || | ||||||||||| || | ||||| ||| Sbjct 330 TGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGAT-CCC 388 Query 25871 TGC-TTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAG 25928 | | ||| | | || ||| | ||| ||||| | ||||||||||| || || || |||| Sbjct 389 TACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAG 447 Query 25929 ATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATAT 25983 |||| ||||| || |||||||| ||||| || || ||| | || ||||||||||| Sbjct 448 ATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATAT 502 >seq597246 Length=243 Score = 95.1 bits (104), Expect = 4e-15 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 25958 GGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCA 26017 || || ||| | || ||||||||||| || || || || | | || | || || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 26018 ATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAAT 26077 |||||| | || |||||||| || |||||||||| | | || |||||| |||||||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 26078 GGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGG 26137 || || || ||| | || ||| | | ||||||||| | || ||||| ||| || Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 26138 AGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACA 26197 | |||||||||| || | | | || ||| | || ||||| ||||||||| || Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 26198 GC 26199 || Sbjct 3 GC 2 >seq472319 Length=337 Score = 86.0 bits (94), Expect = 2e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 26465 AAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGA 26524 || ||||| ||||| ||||||| ||||||||||| ||||| || || || ||||| | Sbjct 336 AAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCAA 277 Query 26525 TTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTT 26574 ||||| || || ||||| ||||| || ||| |||||| | || ||||| Sbjct 276 TTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145565663956320