Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq351396 190 6e-44 seq664408 176 1e-39 seq597246 123 7e-24 seq217498 109 2e-19 >seq351396 Length=451 Score = 190 bits (210), Expect = 6e-44 Identities = 258/360 (72%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || ||||||||||| || ||||| || ||||| |||||||| || | Sbjct 89 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 148 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 | || ||||| | || ||||||||||| | || | || | |||||| || Sbjct 149 ATTAGCTCGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 208 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || || || || || ||||||||||| | || | ||| || Sbjct 209 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 268 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | || ||||||||||||| |||||| |||||| || || || Sbjct 269 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 328 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 329 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 388 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 |||||||| ||||| || ||||| || || | || ||||||| |||| ||||| Sbjct 389 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 448 >seq664408 Length=200 Score = 176 bits (194), Expect = 1e-39 Identities = 154/192 (80%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 36381 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 36440 || |||||||| || || ||||| | ||| ||||| |||||||||||||| ||||| ||| Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 36441 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 36500 ||||| || |||| |||||| |||||| | || || || || | |||||||||||||||| Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 36501 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 36560 || || ||||| |||| |||||| | ||||| |||||| || || |||||||| ||| Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 181 Query 36561 GAATAAGCTACA 36572 || || || ||| Sbjct 182 GAGTATGCAACA 193 >seq597246 Length=243 Score = 123 bits (136), Expect = 7e-24 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 36558 GCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGT 36617 ||||| || || ||| ||||| || | |||||| | | ||||||||||||| | Sbjct 2 GCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCA 61 Query 36618 CGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCT 36677 || |||| ||| | | ||||| | ||||| | ||||| || | ||| || || Sbjct 62 CGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCA 121 Query 36678 CCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCG 36737 || || ||||||||||| || | | |||||||||||| |||||||| ||||| | ||| Sbjct 122 CCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCG 181 Query 36738 ATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAA 36793 || || ||| | || | || || |||||||| || ||||||||||| ||||| Sbjct 182 ATCGCCGCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAA 237 >seq217498 Length=656 Score = 109 bits (120), Expect = 2e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 36759 ATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATA 36818 || || ||||||| || ||||||||||| ||||| | || || ||||||||||||||| Sbjct 517 ATAGCACCAGAGAGAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATA 458 Query 36819 CCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTT 36878 ||||| ||||| || ||||| ||||| | || || || | |||| | | ||| || Sbjct 457 CCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTC 398 Query 36879 AAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTT 36938 || | | ||||||||| | || || ||||| || | || || ||||| | || || Sbjct 397 AATAAAGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCAGTGCTA 338 Query 36939 GTAACCCAGT 36948 || | ||||| Sbjct 337 GTTATCCAGT 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149264172167720