Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq351396 230 7e-56 seq664408 174 5e-39 seq217498 113 1e-20 seq597246 104 7e-18 seq279680 95.1 4e-15 seq171123 91.5 4e-14 seq472319 86.0 2e-12 >seq351396 Length=451 Score = 230 bits (254), Expect = 7e-56 Identities = 249/330 (75%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 89 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 148 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 || || ||||| | || ||| |||||||| || | | ||| | ||||| || Sbjct 149 ATTAGCTCGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 208 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || || || ||||||||||| || || | || || Sbjct 209 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 268 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || || ||||||| ||||| |||||| |||||| ||| ||||| Sbjct 269 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 328 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 329 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 388 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCC 5520 || ||||||||||| || ||||| || || Sbjct 389 AGTCTCTTCCTCTTGACCAAATTTGTAACC 418 >seq664408 Length=200 Score = 174 bits (192), Expect = 5e-39 Identities = 159/197 (81%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 || |||||||| ||||| ||||| | ||||||||| |||||||||||||| ||||| ||| Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 ||||||||||| | ||||||||| ||| ||||||| || || | ||||||||||||| | Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 5723 AAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGC 5781 || ||||| || || | |||||| | || || || | |||| || || ||||| || || Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTA-GCAGCCGCAACAGGAGC 180 Query 5782 TGAATATGCTAC-GCAA 5797 ||| ||||| || |||| Sbjct 181 TGAGTATGCAACAGCAA 197 >seq217498 Length=656 Score = 113 bits (124), Expect = 1e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 5996 ATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACT 6055 || ||||||||||| |||| ||| || | || || ||||| || || || || || ||| Sbjct 502 ATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACT 443 Query 6056 GGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATC 6115 || || ||||| | ||| || | |||||| ||| ||||||||| || | | || ||| Sbjct 442 GGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATC 383 Query 6116 ATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAG 6175 || || ||||| ||||| || | || || ||||| | |||||||| | ||||| ||| Sbjct 382 ATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTGCAG 323 Query 6176 AA 6177 || Sbjct 322 AA 321 >seq597246 Length=243 Score = 104 bits (114), Expect = 7e-18 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 5780 GCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGG 5839 ||||| ||||| || |||||| || ||||| || || | | ||||||||||||| | Sbjct 2 GCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCA 61 Query 5840 CGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCT 5899 || |||| ||| || | ||||| | |||||| | || | || | || || || Sbjct 62 CGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCA 121 Query 5900 CCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCA 5959 |||||||| | ||| ||||| | | || |||||||| || || || ||||| || || Sbjct 122 CCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCG 181 Query 5960 ATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGAT 6019 || || || | || | || || || || || || ||||||||||| |||| ||| Sbjct 182 ATCGCCGCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAA 241 Query 6020 CC 6021 || Sbjct 242 CC 243 >seq279680 Length=543 Score = 95.1 bits (104), Expect = 4e-15 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5196 CTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGG 5255 |||| || || |||||||||||||||||||||| |||||||||||||||||||| || | Sbjct 422 CTAGGTCTAGAGGGAAGTTGTGAGCATTTCGTTTGTGCATTACTTCCATACCAAAATTAG 481 Query 5256 CACGGTTCAGGACATCTGCCCAAGT 5280 ||||||| | || ||| | ||||| Sbjct 482 CACGGTTGATGATATCATCTCAAGT 506 >seq171123 Length=784 Score = 91.5 bits (100), Expect = 4e-14 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5201 TCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGG 5260 || || |||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 784 TCTAGAGGGAAGTTGTGAGCATTTCGTTTGTGCATTACTTCCATACCAAAATTAGCACGG 725 Query 5261 TTCAGGACATCTGCCCAAGT 5280 || | || ||| | ||||| Sbjct 724 TTGATGATATCATCTCAAGT 705 >seq472319 Length=337 Score = 86.0 bits (94), Expect = 2e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 5405 AAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAG 5464 ||||| |||||| ||| ||||| || |||||||| |||||||| | | ||||| Sbjct 227 AAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATTGGCCAAAA 286 Query 5465 TAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTT 5514 || |||||||| || ||||| ||||| | ||||||||||| || ||||| Sbjct 287 TAACCATGAGCAGCCACAATATTATAAATCTCTTCCTCTTGACCAAATTT 336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151442006187480