Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq351396 192 2e-44 seq664408 176 1e-39 seq217498 104 7e-18 seq597246 102 2e-17 >seq351396 Length=451 Score = 192 bits (212), Expect = 2e-44 Identities = 256/356 (72%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||||||| || ||||| || ||||| |||||||| || | | Sbjct 93 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 152 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 || ||||| | || ||||||||||| | || | || | |||||| || || Sbjct 153 GCTCGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGAT 212 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || ||||||||||| | || | ||| || | | Sbjct 213 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 272 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||||| |||||| |||||| ||| || || || Sbjct 273 CAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 332 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| ||| Sbjct 333 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTC 392 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 25808 ||||| ||||| || ||||| || || | || ||||||| |||| ||||| Sbjct 393 TCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 448 >seq664408 Length=200 Score = 176 bits (194), Expect = 1e-39 Identities = 154/192 (80%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 25861 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 25920 || |||||||| || || ||||| | ||| ||||| |||||||||||||| ||||| ||| Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 25921 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 25980 ||||| || |||| |||||| |||||| | || || || || | |||||||||||||||| Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 25981 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 26040 || || ||||| |||| |||||| | ||||| |||||| || || |||||||| ||| Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 181 Query 26041 GAATAAGCTACA 26052 || || || ||| Sbjct 182 GAGTATGCAACA 193 >seq217498 Length=656 Score = 104 bits (114), Expect = 7e-18 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 26239 ATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATA 26298 || || || |||| || ||||||||||| ||||| | || || ||||||||||||||| Sbjct 517 ATAGCACCAGAGAGAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATA 458 Query 26299 CCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTT 26358 ||||| ||||| || ||||| ||||| | || || || | |||| | | ||| || Sbjct 457 CCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTC 398 Query 26359 AAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTT 26418 || | | ||||||||| | || || ||||| || | || || ||||| | || || Sbjct 397 AATAAAGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCAGTGCTA 338 Query 26419 GTAACCCAGT 26428 || | ||||| Sbjct 337 GTTATCCAGT 328 >seq597246 Length=243 Score = 102 bits (112), Expect = 2e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 26038 GCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGT 26097 ||||| || || ||| ||||| || | ||| || | | ||||||||||||| | Sbjct 2 GCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCA 61 Query 26098 CGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCA 26157 || |||| ||| | | || | | ||||| | ||||| || | ||| || ||| Sbjct 62 CGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCA 121 Query 26158 CCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCG 26217 || || || |||||||| || | | |||||||||||| |||||||| ||||| | ||| Sbjct 122 CCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCG 181 Query 26218 ATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAA 26273 || || || | || | || || || ||||| || ||||||||||| ||||| Sbjct 182 ATCGCCGCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAA 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150791195729680