Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq307656 86.0 5e-12 seq17435 84.2 2e-11 >seq307656 Length=504 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||| || || || || ||||||||| ||||| || || |||| | ||| |||| || Sbjct 281 CACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTTAGAGTGCGACCGTCTTC 222 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | || ||||| || || || || || || || || | || | ||| || ||||| Sbjct 221 TAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGTATGCCTTCTTTGTCCTG 162 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||| ||| || ||| | | | || || || |||||||| || | ||||| ||||| Sbjct 161 AATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCACTTCGAGTGTAATGGTTTT 102 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| || || ||||||||||| Sbjct 101 GCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 >seq17435 Length=2785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| || ||||||||| || ||| |||||| || || |||||||||| Sbjct 1840 CCACCCCTGAGCCTCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCC 1781 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || ||||||||||| || ||||| || || | || || || | ||| Sbjct 1780 AATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGGGGG 1721 Query 48660 ACGCCCTCCTTGTC 48673 | ||| |||||||| Sbjct 1720 ATGCCTTCCTTGTC 1707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377844741436140