Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq351396 286 4e-72 seq597246 141 1e-28 seq664408 140 4e-28 seq217498 111 2e-19 seq71309 111 2e-19 seq472319 100 3e-16 seq59528 95.1 1e-14 seq171123 84.2 2e-11 >seq351396 Length=451 Score = 286 bits (316), Expect = 4e-72 Identities = 281/363 (77%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 163123 AGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAG 163182 || ||||||||||| | || || || | ||||| || || || ||||| |||||| Sbjct 451 AGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAG 392 Query 163183 ACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCT 163242 ||||| || ||||| ||||||||||| || ||||| || || |||||||| ||||| | Sbjct 391 ACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 332 Query 163243 TTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGG 163302 ||||||||||| ||||| | ||||||||| | ||||| | ||||| || | |||||| Sbjct 331 TTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGG 272 Query 163303 TTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAA 163362 |||||||| | ||| | |||||||| |||||||| || |||||||| ||||||||| Sbjct 271 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 212 Query 163363 TCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCA 163422 || || ||||| ||| || ||| ||||||||| |||||| | ||| |||| Sbjct 211 TCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCT 152 Query 163423 GGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 163482 |||||||||||||| |||||||| |||||||||||||||||||| || ||||| ||| Sbjct 151 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 92 Query 163483 GCT 163485 ||| Sbjct 91 GCT 89 >seq597246 Length=243 Score = 141 bits (156), Expect = 1e-28 Identities = 179/245 (73%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 162655 GGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCT 162714 ||||| | || ||||| ||||| || |||||||||||| | |||||| ||| || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 162715 ATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAAT 162774 || || | ||||| || || || |||||||| ||| || ||||||||||||| || ||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 162775 GGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT--- 162831 ||||| |||| | || | || | |||||| | | || | ||| | | | Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATG 67 Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| ||||||||||| || ||| || ||||||||||||||||| |||||||||| Sbjct 66 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATAC 7 Query 162892 TCTGC 162896 || || Sbjct 6 TCAGC 2 >seq664408 Length=200 Score = 140 bits (154), Expect = 4e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941 |||||||||||| || || || | || || ||||| |||||| | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001 |||||| |||||||| | |||||| | || || ||||||| ||| |||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061 || ||||| ||||||||||||||||| ||||| || ||||| ||| | || || || || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 163062 TGTATTCGGTGG 163073 ||||||||| || Sbjct 13 TGTATTCGGCGG 2 >seq217498 Length=656 Score = 111 bits (122), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||||||||| |||||||||||| || | | ||| | || || || | Sbjct 361 TCGGATGGTTCGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 420 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| || || |||||||| ||||| |||||||| | || |||||| | |||| Sbjct 421 TCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 480 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTC 162707 | | || ||||| ||||| || ||||||||||| | |||||| ||| Sbjct 481 CTTTACTTTATGGAAACAATATTCTCTCTGGTGCTATTATTCCTACTTC 529 >seq71309 Length=1427 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 163060 GGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTC------TCTTGTTA-CTTC 163112 |||||||||| ||| || ||||||||||| || ||||| ||||| || | || Sbjct 576 GGTGTATTCGACAATTCCCTATTTAGTGCTATACATGGTTCCTTGCTTCTTGGTAACCTC 635 Query 163113 TTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACA 163172 | | |||| ||||| | ||| | || || || | | ||| || || || || Sbjct 636 GAGTTTGATCAAGGAAACAATTGAAAATGAATCT---AATGAGGTTTACAATTTTGGTCA 692 Query 163173 AGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCA 163232 ||| ||||||||||| || ||||| || ||||| || ||| || || |||||||| Sbjct 693 AGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTTCCGATTAATCTTCCA 752 Query 163233 GTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 ||||||| |||||||||||||||||| | ||||| ||| | ||||| Sbjct 753 ATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTCTGCA 801 >seq472319 Length=337 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 || || || ||||| ||||||| ||| || ||||| ||||||||||| || ||||| | Sbjct 336 AAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCAA 277 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTT 163271 || |||||||| ||||| |||||||||||| ||||| | |||||||| Sbjct 276 TTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq59528 Length=1577 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 163057 GCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCT 163116 || ||||||||||| || || || |||||||||||||| ||||| | || || ||| | Sbjct 418 GCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 477 Query 163117 CTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAA 163176 | ||||| |||| || ||| | || || || | ||||| || || || ||||| Sbjct 478 TTGATCAGGGAAATTATTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAG 537 Query 163177 GAAGAGACTTACAACATTGTTGCTG 163201 ||||||||||| || ||||| |||| Sbjct 538 GAAGAGACTTATAATATTGTGGCTG 562 >seq171123 Length=784 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 163335 CAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGT--GGTAAAGTGATT 163392 |||||| || |||||| | || |||||||| || ||||| ||| || || ||| Sbjct 642 CAACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATACAGTCAAGGCCGCGTTATT 701 Query 163393 CCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGT 163452 |||||| | |||||| | ||| | || ||||||||||||| |||||| | || Sbjct 702 AATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGA 761 Query 163453 AATGCTCACAACTTCCCACTTGA 163475 ||||||||||||||||| || || Sbjct 762 AATGCTCACAACTTCCCTCTAGA 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548479124599200