Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq351396 253 2e-62 seq162061 215 6e-51 seq664408 143 3e-29 seq41969 138 1e-27 seq597246 118 1e-21 seq63256 96.9 4e-15 seq623740 95.1 1e-14 seq466979 84.2 2e-11 seq178439 84.2 2e-11 >seq351396 Length=451 Score = 253 bits (280), Expect = 2e-62 Identities = 272/360 (76%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 163519 GAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACA 163578 || || ||||||| ||| || || | |||||||| ||||||||||| |||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 163579 TACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 163638 || || || || || || ||||| || || || || || |||||||||||||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 163639 AACAACAGCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTT 163698 |||||| | | | ||||||||| |||| || |||||||| || ||||||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 163699 ACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 163758 ||||| | || | || || ||||| |||||||| || |||||||| |||||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 163759 ATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGT 163818 | ||||| |||| ||||| || | || |||||||| || | | ||||| ||| | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 163819 CTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCT 163878 || ||||||||||| ||||| || ||||| || ||||||||||| || || || |||||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 215 bits (238), Expect = 6e-51 Identities = 260/351 (74%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 164908 CTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-T 164966 |||||||||| || || || ||||| ||||||||| | ||||| ||||| || || || | Sbjct 214 CTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGT 273 Query 164967 CTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTC 165026 || | | | || ||||| ||||| || | ||||||||||| || || |||||||| Sbjct 274 CTGTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTT 332 Query 165027 AGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGG 165086 || |||||||| || |||||||| || || ||||||| || || ||| ||||| Sbjct 333 TCTGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGC 392 Query 165087 GTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAAC 165146 || |||||||| ||| ||||| | | ||| | |||||||| || || ||||| | ||| Sbjct 393 GTAGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 452 Query 165147 CCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCAT 165206 || || ||||||||||| ||||| || | || || | || |||||| ||||||||| Sbjct 453 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 512 Query 165207 GGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACC 165257 |||| || || ||||| || ||| ||||| || || ||||||||| Sbjct 513 GGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACC 563 >seq664408 Length=200 Score = 143 bits (158), Expect = 3e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 163275 TGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGG 163334 ||| |||||||| || |||||||| || || | || || ||| || | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 163335 TCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCT 163394 |||||| |||||||| | ||||| | || || ||||| | ||||||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 163395 TGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGG 163454 ||| ||||| ||||||||||||||||| ||||| || ||||| ||||| || || ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 163455 TGTCTTCGGTGG 163466 ||| ||||| || Sbjct 13 TGTATTCGGCGG 2 >seq41969 Length=1890 Score = 138 bits (152), Expect = 1e-27 Identities = 159/213 (75%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 165412 CTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGA 165471 |||||||| | | || || ||||| ||| | ||||| || ||||| || ||||| | Sbjct 566 CTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-A 508 Query 165472 TCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATG 165531 || | ||||| ||||||| ||||||||||| |||||||||||||| || || || || | Sbjct 507 TCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 448 Query 165532 AAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAG 165591 | || | ||||| ||| ||||| || ||||| || |||||||| |||| ||||| | Sbjct 447 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 388 Query 165592 AAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | || || | || | || ||||| ||||||| Sbjct 387 AGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 355 >seq597246 Length=243 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 163060 TATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 163119 ||||| ||||| || ||||||||||| || |||| |||| || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 163120 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 163179 || || || || |||||||| ||||| ||||||||||| | || || |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 163180 CAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAA 163239 | || | || | |||||| | | || | | |||||||| ||||| |||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 163240 CTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGC 163289 ||| | || || |||||||| || ||||| ||| |||||||| || Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGC 2 >seq63256 Length=1526 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 164835 CTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTA 164894 ||||| ||||| || || | || || |||| || ||||| || | || || || Sbjct 21 CTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTTTA 80 Query 164895 TGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTT 164954 |||| || || ||||||||||| || || || ||||| ||||||||| | ||||| ||| Sbjct 81 TGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTT 140 Query 164955 GAGCTGGCAC-GTCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 165013 || || || | |||| || | || ||||| ||||| || | ||||||| ||| || Sbjct 141 GAACTTGCTCGGTCT-GTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGATCCAAT 199 Query 165014 TGCTGTTTTTGT 165025 || |||||||| Sbjct 200 CGCGGTTTTTGT 211 >seq623740 Length=225 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 164984 TTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT--GTCAGCGTCTTCCTTATC 165041 ||| ||||| || | |||||| ||| || || |||||| || || |||||||| Sbjct 190 TTATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATT 132 Query 165042 TACCCACTGGGTCAG-----TCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 165096 || |||||||| | | | ||||||| || || ||| ||||| || ||||||| Sbjct 131 TATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAA 72 Query 165097 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATA 165156 | ||| ||||| | | ||| | |||||||| || || ||||| | ||||| || |||| Sbjct 71 TATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATA 12 Query 165157 TGATGGGTGTT 165167 ||||||| ||| Sbjct 11 TGATGGGAGTT 1 >seq466979 Length=342 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 165285 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCG 165344 ||||| |||||||| ||||||||||| ||| |||| ||||| || ||||| || |||| Sbjct 216 GAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTTGGTGTTGCT 157 Query 165345 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 165383 ||||| || || || ||| | ||||| || ||| | ||| Sbjct 156 TTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq178439 Length=759 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/133 (74%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 165466 AGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTAT 165525 |||| ||| | ||| | ||||||| ||||||||||| |||||||||||||| || || | Sbjct 629 AGGAAATCCGTGCAACGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTT 688 Query 165526 TGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCT 165585 | ||||| || | |||| ||| ||||| || ||| |||||||| |||| | Sbjct 689 TAAATGAGGGTATTCGTGGGTGGATGGCAGCTTAGGAT------CATGAAAATCTTATAT 742 Query 165586 TCCCAGAAGAAGT 165598 |||| || || || Sbjct 743 TCCCTGAGGAGGT 755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558519612858400