Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12173 255 1e-62 seq88849 228 2e-54 seq353702 156 8e-33 >seq12173 Length=3197 Score = 255 bits (282), Expect = 1e-62 Identities = 584/871 (67%), Gaps = 35/871 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | |||||||||||||| ||||| |||| || |||||| ||| Sbjct 1495 CTGGTAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 1436 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| || ||| ||||||| | ||| |||| | | ||| | | ||||| Sbjct 1435 CATCCAGTCGAACGGGTTGGCGGCGTTGTACATCTTGGCGCAGCCGAGCGCCATGAGCAG 1376 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | || |||||| |||| ||||| | ||||||| | ||||||||| | ||||| Sbjct 1375 GCGGTCTGCGACGAACTCAATGTACTGGCCCATGAGGCCGGCGTTCATGCCGACGAGGGC 1316 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| | || | || |||||| |||| || | ||||| || | || |||| Sbjct 1315 GCAGGGGAGCGCGTCGCAGATGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTC 1256 Query 48079 CTTAACGCGGGACTC-TGAGGGTT--TGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 ||||||||||| | | | || ||||| | ||| | ||||| | |||||| Sbjct 1255 GCGGACGCGGGACTCGTCAAGCTTGCTGTTGAGGAGGC------CGTAGAGGAGGCAGGC 1202 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| | ||| ||| ||||| || ||||||||||||||||||| ||| || || Sbjct 1201 GAAGTCGCAGTGGCGGCCCTCGTCACGCGAGATGAGCACGTTGGAGAAGGTGAGGCCGGG 1142 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| ||||| || ||||||||||| || || ||| ||||| |||||||| ||||| Sbjct 1141 CATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAATATGCC 1082 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCC 48314 ||| || ||||| ||| ||| || ||| | |||||| || | | ||||| Sbjct 1081 CTCGACGCATGCGAAGGCGACGAG--TCGCTCGG--CGAAGCGCTCGCCGCCGTCGATCC 1026 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGG 48370 || | |||||| | ||||| | ||| ||| | || || | ||| ||| Sbjct 1025 AGCGCATGGCCCAGACGGCCTT----GCGGCGCACGGCGGGGACGGTGTCGACGGCGCGG 970 Query 48371 AAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 |||| | | ||| ||| | |||| | ||||| ||||||| | |||| Sbjct 969 AAGAGGCGGTCCTT---CTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTAC 913 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 ||||| ||||| | ||||| || ||||||||||| ||||||||||| | |||||| Sbjct 912 ATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCG 853 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 ||||| || || | ||| || || ||||| ||| || || || || || Sbjct 852 ACCTGGACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCG 793 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607 || |||||||| || || || | ||| |||||||||| ||| |||||| | || Sbjct 792 GCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGT--CGGGGGAGAGCGTGCCGT 735 Query 48608 CCCTGT-----ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 ||| || |||| | |||||||| || ||| | |||||||||||||| | | Sbjct 734 CCCAGTGGCGCGCGTCGGAGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGACGCCACCG 675 Query 48663 CTTTTTTGTACATGCCCCATATGTCCGGATA 48693 | || ||||| | |||| || | ||| || Sbjct 674 CCTTCTTGTAGAACTCCCAGATCTGCGGGTA 644 >seq88849 Length=1251 Score = 228 bits (252), Expect = 2e-54 Identities = 577/867 (67%), Gaps = 33/867 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| || ||||| ||||| |||| || |||||| ||| Sbjct 42 CTGGTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTC 101 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||| || ||||||||||| | ||| || | || || | ||| | | |||| Sbjct 102 CATCCAGTCGAAGGGGTTGGTGGCGTTGTAGAGCC-TGCCGCAGCCGAGCGCCATGAGCA 160 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||||||||| | ||||||| | ||||||||| | ||| | Sbjct 161 GGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCG 220 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||| || | || ||||| ||| || | || || |||| || |||| Sbjct 221 CGCATGGCAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACAGCCTCCCTGACGATCT 280 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 ||||| ||||| | ||| || ||| || | ||||| | |||||| | Sbjct 281 CGAACACGCGCGACTCGTCCAGCTTGCCCCGGAGGATCTCG---TAGAGGAGGCAGGCGA 337 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| | ||| | || ||||| || ||||||| ||||||||||| ||| || |||| Sbjct 338 AGTCGCAGTGGAGCCCCTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCA 397 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| ||||| || ||||||||||| || || ||| ||||| |||||||||||||||| Sbjct 398 TGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 457 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCAG 48316 | || |||||||| || | ||||| |||||| || | | ||||||| Sbjct 458 CGACGCATGCGAACGCCACGA--TGCGCTCCG--CGAAGCGCTCGCCGCCGTCGATCCAG 513 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGAA 48372 ||||||||||| ||||| | ||| ||| || || || ||||| ||||| Sbjct 514 CGGAGCGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGAA 569 Query 48373 GA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTA 48426 || | | ||| ||| | ||||| | ||||| |||||||| | ||| Sbjct 570 GAGGCGGTCCTT---CTCGGCGGCGTCGCGGATGTAGGTCTCGATGAGCAGC---GAGTA 623 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||||| ||||| | ||||| || ||||||||||| ||||||||||| | ||||| Sbjct 624 CATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGC 683 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 ||||||||| || | ||| | | || ||||| || || || || || || Sbjct 684 CACCTGCACGTCGGACATGAAGCGGGACGCGAGGTTCTCGAGCACGATGCCGTCGGAGGC 743 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATT 48603 || |||||||| || || || | ||| ||||||||| || |||||| | | Sbjct 744 GGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGCCGTCGGTGAGGGTGGTGTC 803 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| | |||| | |||||||| || || | ||||||||||| || | || Sbjct 804 CCAGTGGCGCGCGTCCGAGGAGAGGTCCACCTCCTCGGCCGTCCAGAAGGAGGCCACGGC 863 Query 48664 TTTTTTGTACATGCCCCATATGTCCGG 48690 || ||||| | |||| || | ||| Sbjct 864 CTTCTTGTAGAACTCCCAGATCTGCGG 890 >seq353702 Length=449 Score = 156 bits (172), Expect = 8e-33 Identities = 286/413 (69%), Gaps = 7/413 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| || ||||| ||||| |||| || |||||| ||| Sbjct 408 CTGGTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTC 349 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCC-ATCTGTTCCAGCA 47957 ||| || ||||||||||| | ||| || | || || | ||| | | |||| Sbjct 348 CATCCAGTCGAAGGGGTTGGTGGCGTTGTAGAGCC-TGCCGCACCCGAGCGCCATGAGCA 290 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||||||||| | ||||||| | ||||||||| | ||| | Sbjct 289 GGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCAACGAGCG 230 Query 48018 A-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||||| || || | || ||||| ||| || | || || |||| || ||| Sbjct 229 CGCACGG-CAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACTGCCTCCCTGACGATC 171 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||||||||| | ||| || ||| || | ||||| | ||| || Sbjct 170 TCGAAGACGCGGGACTCGTCCAGCTTGCCCCGGAGGATCTCG---TAGAGGAGGCACGCG 114 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| |||||||| || ||||||| ||||||||||| ||| || ||| Sbjct 113 AAGTCGCAGTGCAGCCCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGC 54 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 |||| ||||| || ||||||||||| || || ||| ||||| |||||||| Sbjct 53 ATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923775693491200