Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq12173 201 2e-46 seq88849 172 1e-37 seq353702 107 4e-18 >seq12173 Length=3197 Score = 201 bits (222), Expect = 2e-46 Identities = 490/736 (67%), Gaps = 24/736 (3%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || ||||| || ||||| || || || || |||||| || | || | Sbjct 774 ACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCTCCAGGT 833 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| || || ||| || |||||| |||||||| |||||||| ||||||| Sbjct 834 TCATGTCCGACGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCG 893 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCG 25774 | || | ||||| ||| |||| | ||| || ||| ||||| |||| ||||| Sbjct 894 AGAACATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCG 953 Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 ||| || || || || | ||| |||| | | ||| | | | ||||| | Sbjct 954 AGAAGGACCGCCTCTTCCGCGCCGTCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGTCT 1013 Query 25835 GGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||||| |||||| || || ||||||| || |||||| || || ||||| Sbjct 1014 GGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGACTCGTCGCCTTC 1069 Query 25894 GC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGC 25951 || ||| || |||||||| || ||| || || || |||| ||||||||||||||||| Sbjct 1070 GCATGC-GTCGAGGGCATATTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGA 1127 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || |||| ||||||||| || ||| ||||||| ||||||| | |||||||| | Sbjct 1128 AGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGTGCTCATCTCGCGTGACGAGGGCC 1187 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA--AACCTTCTCA 26069 |||| | || || |||||||| |||||| |||| | ||| ||| || ||| | Sbjct 1188 GCCACTGCGACTTCGCCTGCCTCCTCTAC---GGCC---TCCTCAACAGCAAGCTTGACG 1241 Query 26070 AGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 || | |||| | ||| || || || || || ||||||| |||||| Sbjct 1242 AGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCATCTGCG 1301 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 | ||||||||| | | |||||| |||| |||||||||| Sbjct 1302 ACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCCGGCCTCATGGGCCAGTACATTGAGT 1361 Query 26189 ATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTA 26245 || || |||| ||||| || | ||| || ||||| | |||| |||| | | Sbjct 1362 TCGTCGCAGACCGCCTGCTCATGGC-GCTCGGCTGCGCCAAGATGTACA--ACGCCGCCA 1418 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 |||||||||||| ||||| ||| || || | || ||||||||||||||||| ||| Sbjct 1419 ACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTTGAGAAGC 1478 Query 26306 GGGTCGGCGACTATCA 26321 | ||||||||||| || Sbjct 1479 GTGTCGGCGACTACCA 1494 >seq88849 Length=1251 Score = 172 bits (190), Expect = 1e-37 Identities = 559/859 (65%), Gaps = 31/859 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| ||| |||||| ||||| ||| | || || Sbjct 884 ATCTGGGAGTTCTACAAGAAGGCCGTGGCCTCCTTCTGGACGGCCGAGGAGGTGGACCTC 825 Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || |||| | | |||| || | || || | | ||||| || || || Sbjct 824 TCCTCGGACGCGCGCCACTGGGACACCACCCTCACCGACGGCGAGCGCCACTTCATCTCC 765 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA-G 25652 ||||| | || ||||| || ||||| || || || ||| |||||| || ||| | Sbjct 764 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTC-GCGTCCCG 706 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| || |||||| | ||||| |||||||| |||||||| ||||| Sbjct 705 CTTCATGTCCGACGTGCAGGTGGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCAT 646 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGT 25769 ||| || | ||||| ||| |||| | ||| || || ||| ||||| |||| Sbjct 645 CGAGAACATCCACTCGGAGATGTACTC---GCTGCTCATCGAGACCTACATCCGCGACGC 589 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||||||| || || || || | |||||||| ||| ||| | | | ||||| Sbjct 588 CGCCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGC 529 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 ||||| | |||||| || || ||||||| || ||||| | || | Sbjct 528 CGACTGGGCGCTCCGCTGGATCGACGGCGGCGAGCGCTTCGCG----GAGCGCATCGTGG 473 Query 25889 CCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 | || || ||| || ||||||||||| ||| || || || |||| ||||||||||||| Sbjct 472 CGTTCGCATGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCT 415 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| || |||| ||||||||| || ||| ||||||||||||||| | ||||| Sbjct 414 CAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCACGCGACGA 355 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 ||| |||||| | || || |||||||| |||||| | || | | | || || Sbjct 354 GGGGCTCCACTGCGACTTCGCCTGCCTCCTCTACGAGATCCTCCGGGGC----AAGCTGG 299 Query 26067 TCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 | || | ||| | | ||| ||| |||||||| || |||||| ||||| Sbjct 298 ACGAGTCGCGCGTGTTCGAGATCGTCAGGGAGGCTGTTGACATCGAGCGCGAGTTCGTCT 239 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 | ||||||||| | ||||||||||| ||||| | Sbjct 238 GCGACGCGCTGCCATGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCG 179 Query 26186 AGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC-- 26242 ||| || ||||||| ||||| || | ||| || || ||| ||||||| |||| Sbjct 178 AGTTCGTCGCCGACCGCCTGCTCATGGC-GCTCGGCTGCGGCAGGCTCTACA--ACGCCA 122 Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302 | ||||| ||||||| ||||| ||| || || | || ||||||||||| || || | Sbjct 121 CCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGAAAGACCAACTTTTTCGAGA 62 Query 26303 AGAGGGTCGGCGACTATCA 26321 || | |||||||| || || Sbjct 61 AGCGCGTCGGCGAGTACCA 43 >seq353702 Length=449 Score = 107 bits (118), Expect = 4e-18 Identities = 258/393 (66%), Gaps = 11/393 (3%) Strand=Plus/Plus Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||||||| || |||| ||||||||| || ||| |||||||||||| Sbjct 22 GCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTC 81 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| | ||||| || || ||| | || || || ||||| |||||| | || | | Sbjct 82 ATCTCACGCGACGAAGGGCTGCACTGCGACTTCGCGTGCCTCCTCTACGAGATCCTCCGG 141 Query 26053 CTCCACAAACCTTCTCAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGA 26111 | || || | || | ||||| | ||| ||| ||||| || || ||||| Sbjct 142 GGC----AAGCTGGACGAGTCCCGCGTCTTCGAGATCGTCAGGGAGGCAGTTGACATCGA 197 Query 26112 GAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCAT 26171 | ||||| | ||||||||| | ||||| Sbjct 198 GCGCGAGTTCGTCTGCGACGCGCTGCCGTGCGCGCTCGTTGGCATGAACGGCGACCTCAT 257 Query 26172 GAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGAC 26230 |||||| ||||| |||| || ||||||| ||||| || | ||| || || ||| | Sbjct 258 GAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGC-GCTCGGGTGCGGCAGGC 316 Query 26231 TCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGAC 26288 |||||| |||| | ||||| ||||||| ||||| ||| || || | || ||||| Sbjct 317 TCTACA--ACGCCACCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGAAAGAC 374 Query 26289 CAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||| || || ||| | |||||||| || || Sbjct 375 CAACTTTTTCGAGAAGCGCGTCGGCGAGTACCA 407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921110077139200