Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq162061 230 2e-55 seq351396 217 2e-51 seq664408 203 3e-47 seq597246 168 7e-37 seq623740 118 1e-21 seq41969 114 1e-20 seq466979 109 6e-19 seq63256 93.3 4e-14 >seq162061 Length=815 Score = 230 bits (254), Expect = 2e-55 Identities = 243/320 (76%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 10118 CTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTA 10177 |||||||| || || || |||| || || ||||||||||| ||||| || || | | Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 10178 ATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGT 10237 || | | || ||||| ||||| ||| | || ||||| || || || |||||||| | Sbjct 276 GTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCT 335 Query 10238 GTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTC 10297 || ||||| || |||||||| || || ||| |||||||||||||||||||||| ||||| Sbjct 336 GTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTA 395 Query 10298 GCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCC 10357 || || || || || ||| | || ||| |||| || ||||||||||||||| | || || Sbjct 396 GCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 455 Query 10358 TTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGA 10417 || ||||||||||||||||| || || | || | ||| || |||| || || || ||| Sbjct 456 TTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGA 515 Query 10418 GTCACTGTAGAAAACACACT 10437 | || ||||||||||| || Sbjct 516 GCGACCGTAGAAAACACTCT 535 >seq351396 Length=451 Score = 217 bits (240), Expect = 2e-51 Identities = 246/330 (75%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 8905 GGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTT 8964 || ||||| || |||||||| || || ||||| || ||||| || |||||||| || ||| Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 8965 GGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTC 9024 || || || |||||||||||||| ||| ||||| ||| | || || |||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 9025 GCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTC 9084 ||||| |||||||| || ||||||||||| || || | || | || ||||||||| Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 9085 AACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAAC 9144 ||||| ||||| ||||| |||||||| || | | || | ||||| || || | || Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 9145 ACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAAC 9204 || ||||| || | | ||||| || || ||||||||||| ||||||||| | || Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 9205 GCACACAACTTCCCGCTTGACCTTGCGGCT 9234 || ||||||||||| || ||||| || ||| Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq664408 Length=200 Score = 203 bits (224), Expect = 3e-47 Identities = 160/192 (83%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 8631 TGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGG 8690 |||||||||||| ||||||||||| |||||| ||||||| ||| | | || ||| |||| Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 8691 TCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCT 8750 |||||| |||||||||||||||||| | || || || |||| ||||||| |||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 8751 TGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGG 8810 ||| |||||||| |||||||||||||| ||||| || ||||||||| | ||||| ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 8811 TGTCTTCGGCGG 8822 ||| |||||||| Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 168 bits (186), Expect = 7e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 8416 TACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCAC 8475 || || ||||| || ||||||||||| || |||| | || || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 8476 TTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTAC 8535 || ||||| || |||||||| || ||| ||||||||||| | ||||| ||||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 8536 CAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAA 8595 |||| | ||| | |||||| | ||||| || | ||||||||||||||| |||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 8596 CTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCT 8646 ||| || ||| | || |||||||||||||| |||||||||||| ||| Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGCT 1 >seq623740 Length=225 Score = 118 bits (130), Expect = 1e-21 Identities = 143/191 (75%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 10192 TTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTT--GTCAGTGTTTTCCTCATC 10249 ||| ||||| ||| | || ||| | | || || |||||| || ||| ||||| || Sbjct 190 TTATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATT 132 Query 10250 TATCCACTCGGACAGT-CTA----GTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGA 10304 |||||||| || | | | |||||||||||||||||||||| ||||| || || | Sbjct 131 TATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAA 72 Query 10305 TTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATA 10364 | || || ||| | || ||| |||| || ||||||||||||||| | || || || |||| Sbjct 71 TATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATA 12 Query 10365 TGATGGGAGTT 10375 ||||||||||| Sbjct 11 TGATGGGAGTT 1 >seq41969 Length=1890 Score = 114 bits (126), Expect = 1e-20 Identities = 142/193 (74%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 10620 CTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGA 10679 ||||||| | | || || ||||| || | ||||| || |||||||| || || || | Sbjct 566 CTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-A 508 Query 10680 TCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACG 10739 || | || | ||||||| |||||||||||| ||||| || || ||||| ||| | |||| Sbjct 507 TCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 448 Query 10740 AAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAG 10799 | ||| ||||||| ||||||||| | || || || || |||| || | ||||| | Sbjct 447 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 388 Query 10800 AAGAAGTTCTTCC 10812 | || ||||| || Sbjct 387 AGGAGGTTCTACC 375 >seq466979 Length=342 Score = 109 bits (120), Expect = 6e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 10484 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 10543 ||||||| ||||| || ||||| ||||| ||||||||| | || |||||||| || ||| Sbjct 225 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTT 166 Query 10544 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTT 10591 || |||||||| ||||||||| ||| | |||||||||||||| ||| Sbjct 165 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq63256 Length=1526 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 10043 CTACTTTGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTC 10102 ||||| ||||| || || | || |||||||| |||||| ||| | || || | Sbjct 21 CTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTTTA 80 Query 10103 TGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTT 10162 ||| | ||||| || |||||||| || || || |||| || || ||||||||||| ||| Sbjct 81 TGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTT 140 Query 10163 GAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATT 10222 || || || | | || | | || ||||| ||||| ||| | || |||| || || Sbjct 141 GAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGATCCAATC 200 Query 10223 GCTGTTTTTGT 10233 || |||||||| Sbjct 201 GCGGTTTTTGT 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512179141920000