Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq10030 158 8e-33 seq307656 95.1 8e-14 seq13300 95.1 8e-14 seq4181 91.5 1e-12 seq1192 91.5 1e-12 seq2610 89.7 3e-12 seq20971 86.0 4e-11 >seq10030 Length=3428 Score = 158 bits (174), Expect = 8e-33 Identities = 537/820 (65%), Gaps = 20/820 (2%) Strand=Plus/Plus Query 475364 GCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCAT 475421 || |||||||| || | |||||||||||||| || ||||| || | | || | || Sbjct 124 GCCACAGCTGGTGACACTCATCTTGGTGGTGAGGACTTTGACAACCGTATGGTGAACCAC 183 Query 475422 GGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGTTGATCTTTCAACATCTGCTAAAGC 475479 | ||| | || ||||||||||| | || || ||| | | | | | | | Sbjct 184 --TTTGTCCAGGAGTTCAAGAGGAAGCACAAGAAGGATATCAGTGGAAACCCG--AGGTC 239 Query 475480 ATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCA 475539 || || | ||||| ||| | ||||| | || ||| | | |||||||| || | || Sbjct 240 TTTGAGGAGGCTTAGGACTTCATGTGAGAGGGCGAAGAGGACCCTTTCTTCCACTGCCCA 299 Query 475540 AACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTA-TAATACTCTTATTACAA 475598 |||||| |||| | || || || ||||| ||| |||||| || | | | || || | Sbjct 300 AACTACCATTGAGATCGACTCACTCTTTGAGGGAGTTGATTTCTACTCCACC-ATCACCA 358 Query 475599 GGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAAC 475658 |||| | ||||| || || || ||||| || || || || || || || Sbjct 359 GGGCCAGGTTTGAGGAGCTTAACATGGACCTCTTCAGGAAGTGCATGGAGCCAGTGGAG- 417 Query 475659 AAGTTC-TCAGAGATTCTAAACTTGACAA-ATCACAAGTCCATGAAATTGTTCTTGTAGG 475716 |||| | | || ||| | || | ||||| | ||| | ||||||| |||| ||||| || Sbjct 418 AAGTGCCTGAGGGATGCAAAGATGGACAAGAGCACCA-TCCATGATGTTGTCCTTGTCGG 476 Query 475717 AGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAA 475775 ||||| || |||||||| | | | | |||| || | | || ||||| || Sbjct 477 TGGTTCCACCAGAATTCCCAGAGTCCAGCAGCTGCTG-CAGGACTTCTTCAATGGCAAGG 535 Query 475776 AGTTAAATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGC 475833 || | || ||| | | || || |||||||||||||| ||||| ||||||||||| || Sbjct 536 AGCTC--TGCAAGAGCATTAACCCGGATGAAGCTGTTGCCTATGGTGCTGCTGTCCAGGC 593 Query 475834 AGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAAC 475893 ||||| | ||| | ||||||| | | | || | || ||||||| || Sbjct 594 TGCTATCCTCAGTGGTGAGGGTAACGAGAAGGTGCAGGACCTTCTCCTCCTTGACGTGAC 653 Query 475894 TCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953 ||||| ||| | ||||| || || | ||| || | |||||| || || ||| || Sbjct 654 ACCACTGTCACTTGGTCTCGAGACTGCTGGTGGAGTCATGACTGTGCTCATCACCAGGAA 713 Query 475954 TACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013 || | ||||| ||| || | || || ||||| || ||||| || || | Sbjct 714 CACCACCATCCCTACCAAGAAGGAGCAGGTCTTCTCCACCTACTCTGACAACCAGCCTGG 773 Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073 ||| ||||| | ||||| ||||| || | | || | ||||| ||| ||||| Sbjct 774 TGTGCTTATCCAGGTGTTTGAGGGTGAGAGGACAAGGACCAGGGATAACAACCTCCTTGG 833 Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133 | ||| | || |||||||| ||||| ||||| || |||||||| || || Sbjct 834 CAAGTTTGAGCTCTCTGGTATTCCACCTGCACCCAGGGGTGTTCCTCAGATCACTGTCTG 893 Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||| |||||||| |||||||| || ||||| ||||| Sbjct 894 CTTTGACATTGATGCCAATGGTATCCTGAATGTCTCTGCT 933 >seq307656 Length=504 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || | ||| || || || ||||| ||||| || || || || |||||||||||||| Sbjct 455 ATCCTCTAATTGTTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTT 396 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||| || ||||| ||| ||| ||||| || |||| | | | |||||||||| Sbjct 395 GTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCAGACGCCTCTA-CCTCAAGGGTAA 337 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||||| || | |||||| || || ||||| Sbjct 336 TAGTTTTACCCGTCAAAGTCTTGACAAAGATTTG 303 >seq13300 Length=3096 Score = 95.1 bits (104), Expect = 8e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| || || || || || || || || | || || || || |||| Sbjct 1507 ATGCTGTTGTCACTGTCCCTGCCTACTTCAACGACTCCCAGAGGCAGGCCACCAAGGATG 1448 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||| |||||| | || || || ||||||||||| || || || Sbjct 1447 CTGGAGTGATTGCTGGTCTGAATGTTATGCGGATCATCAATGAACCAACTGCTGCTGCTA 1388 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 1387 TTGCTTATGGTCTTGACAAGAA 1366 >seq4181 Length=4513 Score = 91.5 bits (100), Expect = 1e-12 Identities = 105/137 (77%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 321775 ATGTAAGATTTTTTGCAATAATTAATGGTAAACC-AACT--TCATTCAGTGCAATATTTG 321831 |||| ||||| ||||||| | |||| | || |||| ||| | | || ||||| | Sbjct 2688 ATGTCAGATTCAATGCAATACTCCATGGCACCCCCAACTGATCAAT-ATTG--ATATTGG 2632 Query 321832 GATCAGATGTGATAACTGTACGACCAGACATATCAACACGTTTACCCATAAGATTTCCTC 321891 |||| | |||||| || |||||| | || | ||||||||| || ||||| | |||||||| Sbjct 2631 GATCTGGTGTGATGACCGTACGAGCTGAGAAATCAACACGCTTCCCCATCAAATTTCCTC 2572 Query 321892 TAATACGACCTTCTTTT 321908 |||| |||||||||||| Sbjct 2571 TAATCCGACCTTCTTTT 2555 >seq1192 Length=6114 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || |||||||||||||||||||| |||||| |||| || || || || || ||||| Sbjct 3782 GCTGTGATTACTGTTCCAGCATATTTCAATGATGCTCAGCGGCAGGCCACCAAGGATGCT 3723 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| ||||| | || || ||||| ||||| || || || || Sbjct 3722 GGTCGTATTGCTGGGCTTGATGTTGAGAGGATCATCAATGAGCCAACTGCTGCTGCTCTG 3663 Query 474857 GCTTATGG 474864 ||||||| Sbjct 3662 TCTTATGG 3655 >seq2610 Length=5087 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || ||||||| || ||||| || ||||| || || | || || || || |||| Sbjct 2086 ATGCTGTTGTTACTGTCCCTGCATACTTCAATGACTCGCAGAGGCAGGCCACCAAGGATG 2145 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| ||| | |||||| | || || || || || || ||||| || || Sbjct 2146 CTGGTGTCATTGCTGGTATCAATGTTCTGCGAATCATCAACGAGCCCACAGCTGCTGCCA 2205 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 2206 TTGCTTATGGTCTTGACAAGAA 2227 >seq20971 Length=2589 Score = 86.0 bits (94), Expect = 4e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 476084 CTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATT 476143 ||||| || |||||||||||||| | || ||||| ||||||||||| | ||||||||| Sbjct 1274 CTTGATGGAATTCCTCCTGCTCCACGTGGTGTTCCACAAATTGAAGTCAAGTTTGATATT 1333 Query 476144 GATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||| || ||||| || |||| ||||| Sbjct 1334 GATGCCAACGGTATCCTGTCTGTTGCTGCT 1363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3239603507494640