Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq351396 298 6e-76 seq162061 197 1e-45 seq597246 168 7e-37 seq664408 152 6e-32 seq217498 114 1e-20 seq63256 114 1e-20 seq171123 107 2e-18 seq466979 100 3e-16 seq634786 96.9 4e-15 seq279680 84.2 2e-11 >seq351396 Length=451 Score = 298 bits (330), Expect = 6e-76 Identities = 282/360 (78%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 161503 GAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 161562 ||||| || ||||| || || || | |||||||| || |||||||| |||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 161563 TACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTC 161622 || || || || ||||| || || || || || || | || |||||||| ||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 161623 AACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTC 161682 |||||||| || || | ||||||||| | |||||||||||||| || || ||||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 161683 ACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCT 161742 ||||| | || | || || ||||| |||||||| ||||||||||| |||||||| ||| Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 161743 ATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGT 161802 | ||||||||||| ||| ||||| || || ||||| || | ||||||| ||| | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 161803 CTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCT 161862 ||||| |||||||| |||||||| || |||||||||||||||||||| ||||| |||||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 197 bits (218), Expect = 1e-45 Identities = 238/321 (74%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 162420 CTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CT 162478 |||||||| || |||||||| |||||||||||| | ||||| |||||||| || || || Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 162479 TATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAG 162538 || | | || ||||| ||||| || | ||||| ||||| || || || || ||| Sbjct 276 GTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 162539 TGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGT 162598 ||| || ||||| ||||| |||| ||||| |||||||| || ||| || || || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 162599 CGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCC 162658 |||||||| || |||||| | || ||| ||||||| || ||||| |||||| | || || Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 162659 TTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGG 162718 ||||| |||||||| || || || | | || | || |||| | ||||||||||| Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 162719 AGTGACAGTTGAAAATACACT 162739 || ||| || ||||| || || Sbjct 515 AGCGACCGTAGAAAACACTCT 535 >seq597246 Length=243 Score = 168 bits (186), Expect = 7e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 161044 TATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCAC 161103 ||||||||||| || |||||||||||| |||| ||| |||| || ||||| ||||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 161104 TTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTC 161163 || ||||| || |||||||| ||| | | || || ||| | ||||| |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 161164 CAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAA 161223 | || |||| | |||||| | |||| | | ||| |||||||||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 161224 CTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCT 161274 ||| || |||| |||| ||||||||||||||| || |||||||| ||| Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGCT 1 >seq664408 Length=200 Score = 152 bits (168), Expect = 6e-32 Identities = 152/196 (78%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 161256 TTGC-GTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTT 161314 |||| || |||||||| |||||||| || || || | ||| || ||| || | || ||| Sbjct 197 TTGCTGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTA 138 Query 161315 TCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACA 161374 | |||||||| |||||||||| |||||| | || || ||||||| ||||||| | Sbjct 137 TTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTA 78 Query 161375 TGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAG 161434 || |||| ||||| |||||||||||||| || ||||| || ||||| ||| | || |||| Sbjct 77 TGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAG 18 Query 161435 CAGGTGTGTTTGGCGG 161450 | ||||| || ||||| Sbjct 17 CTGGTGTATTCGGCGG 2 >seq217498 Length=656 Score = 114 bits (126), Expect = 1e-20 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || || |||||| | || ||||| || ||||| ||||| | || |||||||| || || Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 160936 ATGATTCCCTGCTTGCTCG-CTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993 ||||| |||| ||| | | | || || | ||| || || || |||||| | | ||| | Sbjct 381 ATGAT-CCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCC 438 Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053 | || || || || || || |||||||| || || ||||||| | | |||||||||| Sbjct 439 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 498 Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTC 161084 | || ||||||||||| |||| ||| |||| Sbjct 499 ATATTCTCTCTGGTGCTATTATTCCTACTTC 529 >seq63256 Length=1526 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 162343 TGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGAC 162402 |||| |||||||| || || | ||||| || || | |||||||| || | || || Sbjct 19 TGCTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTT 78 Query 162403 TCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGT 162462 | ||||| ||||| || |||||||| || |||||||| |||||||||||| | ||||| | Sbjct 79 TATGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAAT 138 Query 162463 TTGAACTGGCAC-GACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCT 162521 ||||||| || | | || || | | || ||||| ||||| || | ||||| | ||| Sbjct 139 TTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGATCCA 197 Query 162522 ATTGCTGTATTCGTT 162536 || || || || ||| Sbjct 198 ATCGCGGTTTTTGTT 212 >seq171123 Length=784 Score = 107 bits (118), Expect = 2e-18 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 161712 CAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATA--GTCAGGGTAAAGTTATC 161769 |||||| ||||||||| | || ||||| ||| | ||||||| |||| || ||||| Sbjct 642 CAACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATACAGTCAAGGCCGCGTTATT 701 Query 161770 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGC 161829 || || || | || | ||||||||||| | |||| |||||||| |||||| | || Sbjct 702 AATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGA 761 Query 161830 AATGCTCACAACTTCCCTCTTGA 161852 |||||||||||||||||||| || Sbjct 762 AATGCTCACAACTTCCCTCTAGA 784 >seq466979 Length=342 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 162774 GCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGG 162833 || ||| || | || || | |||||||| ||||| ||||| ||||| ||| |||| ||| Sbjct 237 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGG 178 Query 162834 TCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTT 162893 || || || || ||| |||||||| || || |||||||| |||||||||||||| ||| Sbjct 177 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq634786 Length=218 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 162129 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 162188 || |||||| | ||| ||||||||||||||||| || |||||||| || | || ||| Sbjct 143 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 84 Query 162189 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 162248 || ||||||| | ||| | ||||||||| |||| ||||| ||||| || || |||| Sbjct 83 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 24 Query 162249 TAT 162251 ||| Sbjct 23 TAT 21 >seq279680 Length=543 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/118 (76%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 161740 TCTATCGTTGATA--GTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTG 161797 ||| | ||||||| |||| || ||||| || || || | || | ||||||||| Sbjct 541 TCTGTAGTTGATACAGTCAAGGCCCCGTTATTAATACTTGAGATGATATCATCAACCGTG 482 Query 161798 CTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACCT 161855 || | |||| |||||||| |||||| | || |||||||||||||||||||| ||||| Sbjct 481 CTAATTTTGGTATGGAAGTAATGCACAAACGAAATGCTCACAACTTCCCTCTAGACCT 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543185972128800