Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq351396 219 1e-52 seq664408 145 2e-30 seq597246 120 9e-23 seq217498 113 1e-20 seq472319 89.7 2e-13 >seq351396 Length=451 Score = 219 bits (242), Expect = 1e-52 Identities = 267/363 (74%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 92 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 151 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||||| ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 152 AGCTCGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACA-- 209 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| || || ||||||||||| || || | || || Sbjct 210 -GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 268 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || |||||||||||||||||||| |||| | | ||||| Sbjct 269 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 328 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || ||||||||||| Sbjct 329 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 388 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 |||||||| ||||| |||||||| || || | || ||| ||| ||||| ||||| Sbjct 389 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 448 Query 18191 TCT 18193 || Sbjct 449 CCT 451 >seq664408 Length=200 Score = 145 bits (160), Expect = 2e-30 Identities = 156/201 (78%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 18243 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCG 18302 || |||||||| || || ||||| | ||| ||||| |||||||||||||| ||||| || Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 18303 GCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAG 18362 || |||||||| | ||| || |||||| |||| || || | |||||||||||||||| Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 18363 AAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTG 18420 || || ||||| |||| ||| |||| | ||||| || | || | ||||| || || || | Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAA-ACAGCAGTA-GCAGCCGCAACAGGAG 179 Query 18421 CGGAATAAGCAACACAAATCC 18441 | || || |||||| ||||| Sbjct 180 CTGAGTATGCAACAGCAATCC 200 >seq597246 Length=243 Score = 120 bits (132), Expect = 9e-23 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 18420 GCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGT 18479 || || || |||||| |||||| || |||||||| | | ||||||||||||| | Sbjct 2 GCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCA 61 Query 18480 CGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCT 18539 || ||||| ||| || | || | | ||||| | ||||| || | ||| || || Sbjct 62 CGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCA 121 Query 18540 CCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCG 18599 || || ||||||||||| || | | |||||||||||| |||||||| ||||| | ||| Sbjct 122 CCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCG 181 Query 18600 ATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAA 18655 || || || | || | || || || || || || ||||||||||| ||||| Sbjct 182 ATCGCCGCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAA 237 >seq217498 Length=656 Score = 113 bits (124), Expect = 1e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 18636 ATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACG 18695 || ||||||||||| ||||| | || || |||||||||||||||||||| || || || Sbjct 502 ATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACT 443 Query 18696 GGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATC 18755 ||||| ||||| | || || || | |||| | | || |||||| || | | ||||||| Sbjct 442 GGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATC 383 Query 18756 ATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGT 18810 || | || || ||||| || | ||| || ||||| | || || || | ||||| Sbjct 382 ATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCAGTGCTAGTTATCCAGT 328 >seq472319 Length=337 Score = 89.7 bits (98), Expect = 2e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || |||||||| |||||||| | | ||||| || |||||||| || |||||| Sbjct 248 TTGTTGAAACTAGCATATTGGAAGATTAATTGGCCAAAATAACCATGAGCAGCCACAATA 307 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTT 18154 ||||| ||||||| ||||| |||||||| Sbjct 308 TTATAAATCTCTTCCTCTTGACCAAATTT 336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150121337160920